RP11-122A3.2

General Information

Gene Name : RP11-122A3.2
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-122A3.2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-122A3.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-122A3.2 RNA is bound by 7 proteins.

eCLIP assay for RP11-122A3.2 is not avaliable on ENCORE database.

7 proteins are bound to RP11-122A3.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	91970893	91970936	-	3'-UTR,intron-Distal	4.12594	3.98311	K562	IGF2BP1
chr8	91970875	91971001	-	3'-UTR,intron-Distal	4.22544	21.62777	K562	PUM2
chr8	91997340	91997412	-	5'-UTR,intron-Distal	5.15369	10.52122	K562	DDX3X
chr8	91992638	91992690	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.54500	7.73893	K562	DDX3X
chr8	91990809	91990834	-	CDS,intron-Distal	4.22572	14.59237	K562	YBX3
chr8	91990834	91990867	-	CDS,intron-Distal	4.00397	15.28106	K562	YBX3
chr8	91972991	91973061	-	CDS,intron-Distal	3.94724	7.00273	K562	YBX3
chr8	91990828	91990877	-	CDS,intron-Distal	4.37754	4.24698	K562	IGF2BP1
chr8	91976702	91976835	-	intron-Distal	4.43900	4.72162	K562	KHSRP
chr8	91997069	91997166	-	intron-Distal	4.07368	3.31283	K562	PRPF8
chr8	91972297	91972472	-	intron-Distal	3.76468	3.37631	K562	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-122A3.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-122A3.2 is not available on ENCORE database.
23 RBPs can affect the levels of RP11-122A3.2.

The Knockdown/knockout RNA-Seq assay for RP11-122A3.2 is not available on ENCORE database.

23 RBPs can affect the gene expression of RP11-122A3.2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-122A3.2	ENSG00000253250.2	12.29490	1.57010	2.96900	2.04460	1.46250	HepG2	PUM2
RP11-122A3.2	ENSG00000253250.2	826.53780	610.98750	0.43580	4.60550	3.90570	K562	AGGF1
RP11-122A3.2	ENSG00000253250.2	357.82350	700.63720	-0.96940	10.08590	9.07230	K562	AQR
RP11-122A3.2	ENSG00000253250.2	512.93150	411.49990	0.31780	2.08380	1.44450	K562	EIF2S2
RP11-122A3.2	ENSG00000253250.2	100.02810	271.97090	-1.44300	10.95370	8.73080	K562	EIF3D
RP11-122A3.2	ENSG00000253250.2	275.18540	402.23850	-0.54760	3.55390	2.62690	K562	EIF4A3
RP11-122A3.2	ENSG00000253250.2	166.71800	241.86930	-0.53680	2.64370	1.40880	K562	EXOSC5
RP11-122A3.2	ENSG00000253250.2	576.67140	399.51460	0.52940	3.62960	2.72260	K562	HSPD1
RP11-122A3.2	ENSG00000253250.2	429.15890	561.67730	-0.38820	2.59040	1.69980	K562	MATR3
RP11-122A3.2	ENSG00000253250.2	268.32460	348.04530	-0.37530	2.09150	1.38330	K562	MTPAP
RP11-122A3.2	ENSG00000253250.2	280.21100	386.69350	-0.46470	3.29890	2.49060	K562	NSUN2
RP11-122A3.2	ENSG00000253250.2	346.40840	500.76950	-0.53170	3.57280	2.46390	K562	PCBP2
RP11-122A3.2	ENSG00000253250.2	194.27620	307.65660	-0.66320	3.47600	2.54330	K562	PCBP3
RP11-122A3.2	ENSG00000253250.2	1162.09110	630.50300	0.88200	11.53950	10.47890	K562	PUS1
RP11-122A3.2	ENSG00000253250.2	342.89770	524.32830	-0.61270	4.91380	3.75430	K562	RBM22
RP11-122A3.2	ENSG00000253250.2	61.45640	217.54930	-1.82370	14.35970	12.11590	K562	RCC2
RP11-122A3.2	ENSG00000253250.2	271.54080	381.59180	-0.49090	3.27950	2.39430	K562	SF3A3
RP11-122A3.2	ENSG00000253250.2	335.47580	440.74370	-0.39370	2.44110	1.63980	K562	SF3B4
RP11-122A3.2	ENSG00000253250.2	105.08160	167.09940	-0.66920	2.50860	1.31090	K562	SLBP
RP11-122A3.2	ENSG00000253250.2	321.06530	536.06110	-0.73950	7.02300	5.90410	K562	SRSF1
RP11-122A3.2	ENSG00000253250.2	167.85740	243.64570	-0.53750	2.30900	1.45640	K562	TRIM56
RP11-122A3.2	ENSG00000253250.2	330.14580	424.32120	-0.36210	2.02660	1.34020	K562	U2AF2
RP11-122A3.2	ENSG00000253250.2	718.83960	949.56960	-0.40160	3.51300	1.91680	K562	UBE2L3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-122A3.2 is not available on ENCORE database.

11 RBPs can affect the splicing of RP11-122A3.2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91990806	91990880			91983293	91983369	91992590	91992689	-0.11500	0.00055	0.01274	excluded	K562	SF3B4
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91974359	91974424			91972969	91973076	91983293	91983369	0.07200	0.00000	0.00017	included	K562	MATR3
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91990806	91990880			91983293	91983369	91992590	91992689	-0.08700	0.00016	0.00743	excluded	K562	AKAP8L
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91990806	91990880			91983293	91983369	91992590	91992689	-0.20400	0.00000	0.00000	excluded	K562	PUS1
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91990806	91990880			91983293	91983369	91992590	91992689	-0.17400	0.00000	0.00009	excluded	K562	U2AF1
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91990806	91990880			91983293	91983369	91992590	91992689	-0.11500	0.00001	0.00073	excluded	K562	UTP18
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91990806	91990880			91983293	91983369	91992590	91992689	-0.10400	0.00122	0.02373	excluded	K562	U2AF2
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91990806	91990880			91983293	91983369	91992590	91992689	-0.09700	0.00010	0.00457	excluded	K562	RBM15
SE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91990806	91990880			91983293	91983369	91992590	91992689	-0.16100	0.00165	0.02906	excluded	K562	HNRNPC
A3SS	RP11-122A3.2	ENSG00000253250.2	chr8	-	91992590	91992781			91992590	91992689	91997341	91997485	0.08000	0.00000	0.00000	longer	K562	AQR
MXE	RP11-122A3.2	ENSG00000253250.2	chr8	-	91983293	91983369	91990806	91990880	91972969	91973076	91992590	91992689	0.28700	0.00006	0.00533	1included	K562	SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-122A3.2

General Information

Functions

Localization

Domains (AlphaFold: RP11-122A3.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-122A3.2 is not avaliable on ENCORE database.

7 proteins are bound to RP11-122A3.2 RNA:

eCLIP assay for RP11-122A3.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-122A3.2 is not available on ENCORE database.

23 RBPs can affect the gene expression of RP11-122A3.2 :

The Knockdown/knockout RNA-Seq assay for RP11-122A3.2 is not available on ENCORE database.

11 RBPs can affect the splicing of RP11-122A3.2 :

The Knockdown/knockout RNA-Seq assay for RP11-122A3.2 is not avaliable on ENCORE database.