RNF113A

General Information

Gene Name       : RNF113A
Gene ID             : ENSG00000125352.5
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RNF113A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF113AENSG00000125352.59.5616.0712.82ENCSR000AEF
HepG2RNF113AENSG00000125352.511.5910.3910.99ENCSR985KAT
K562RNF113AENSG00000125352.520.0622.0921.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RNF113ARibo-STAMP-293TshRNABGRSLV03-43,BGRSLV03-44BGRSLV03-1,BGRSLV03-2NotSatisfiedENCORE2
RNF113ARibo-STAMP-293TshRNARNF113A-BGRSLV06-29,RNF113A-BGRSLV06-30NT-BGRSLV06-1,NT-BGRSLV06-2,SubmittedENCORE2
RNF113ARibo-STAMP-293TshRNABGRSDLV03-29,BGRSDLV03-30BGRSDLV03-1,BGRSDLV03-2SubmittedENCORE2
RNF113ARibo-STAMP-293TshRNARNF113A-BGRSDLV03-31dox,RNF113A-BGRSDLV03-32doxRNF113A-BGRSDLV03-29,RNF113A-BGRSDLV03-30,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF113A is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF113A RNA is bound by 4 proteins.  







eCLIP assay for RNF113A is not avaliable on ENCORE database.





4 proteins are bound to RNF113A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX119005622119005671-5'-UTR4.463794.70436K562RBM15
chrX119005138119005175-CDS3.997343.15006K562RBM15
chrX119005293119005336-CDS3.302115.04943K562ZNF622
chrX119004678119004751-CDS3.934013.43253K562YBX3
chrX119004677119004729-CDS4.727285.85529K562RBM15
chrX119005260119005370-CDS5.4133010.23513K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF113A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF113A is not available on ENCORE database.

  • 45 RBPs can affect the levels of RNF113A.  








The Knockdown/knockout RNA-Seq assay for RNF113A is not available on ENCORE database.





45 RBPs can affect the gene expression of RNF113A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF113AENSG00000125352.4316.52770456.30720-0.527702.909902.27040HepG2DDX3X
RNF113AENSG00000125352.4189.96190416.42120-1.132309.309708.14510HepG2EIF4A3
RNF113AENSG00000125352.4286.95170405.45550-0.498702.033801.43920HepG2EIF4B
RNF113AENSG00000125352.4244.26800336.55390-0.462403.050702.42390HepG2ETF1
RNF113AENSG00000125352.4214.62490317.36870-0.564303.131802.29930HepG2FUBP3
RNF113AENSG00000125352.4241.66660420.16900-0.798005.611104.64790HepG2FXR1
RNF113AENSG00000125352.4177.73220389.75920-1.132909.558108.35950HepG2G3BP1
RNF113AENSG00000125352.4234.63320413.79140-0.818505.898104.58690HepG2G3BP2
RNF113AENSG00000125352.4115.93340201.05470-0.794303.488602.71600HepG2HNRNPC
RNF113AENSG00000125352.4268.56820394.68800-0.555403.081702.34600HepG2HNRNPK
RNF113AENSG00000125352.4407.79610309.360800.398503.020202.31850HepG2HNRNPL
RNF113AENSG00000125352.4260.96650396.17840-0.602303.457302.71070HepG2IGF2BP2
RNF113AENSG00000125352.4221.82990398.49390-0.845105.122803.71900HepG2KHSRP
RNF113AENSG00000125352.4222.17850420.31580-0.919807.016805.98730HepG2MAGOH
RNF113AENSG00000125352.4248.35330422.66540-0.767104.754803.94520HepG2MATR3
RNF113AENSG00000125352.4226.71400432.61930-0.932207.073406.08350HepG2NCBP2
RNF113AENSG00000125352.4311.45790198.387700.650602.577501.72780HepG2PABPC1
RNF113AENSG00000125352.4225.90620385.26500-0.770105.117504.14780HepG2PABPC4
RNF113AENSG00000125352.4280.16780378.35420-0.433402.823702.21300HepG2PCBP1
RNF113AENSG00000125352.479.94430145.56350-0.864602.869802.04650HepG2PRPF8
RNF113AENSG00000125352.4270.58500384.98640-0.508703.523402.92220HepG2PTBP1
RNF113AENSG00000125352.4275.95330416.95640-0.595504.323903.56770HepG2QKI
RNF113AENSG00000125352.4239.08920378.41220-0.662404.625703.77320HepG2RBM25
RNF113AENSG00000125352.4221.33130428.45550-0.952909.952309.04370HepG2NELFE
RNF113AENSG00000125352.4211.74560399.04330-0.914209.096308.07710HepG2RECQL
RNF113AENSG00000125352.4273.22570177.872000.619203.990803.24120HepG2SAFB2
RNF113AENSG00000125352.4253.08850400.82610-0.663305.382304.60420HepG2SF3B4
RNF113AENSG00000125352.4202.89770418.37340-1.0440011.4600010.63920HepG2SRSF1
RNF113AENSG00000125352.4281.52230361.02420-0.358801.827201.30240HepG2SUCLG1
RNF113AENSG00000125352.4242.26360376.04390-0.634304.786504.08180HepG2TAF15
RNF113AENSG00000125352.4257.23900195.803500.393601.897301.41280HepG2TRIM56
RNF113AENSG00000125352.4857.72250680.424700.334003.068402.47530K562AGGF1
RNF113AENSG00000125352.41100.75800708.014500.636507.396206.28480K562AKAP8L
RNF113AENSG00000125352.41061.04740693.744200.612906.305405.47970K562AQR
RNF113AENSG00000125352.4922.56830742.881100.312402.696001.79460K562ATP5C1
RNF113AENSG00000125352.4963.45310761.863000.338603.283602.31940K562DKC1
RNF113AENSG00000125352.4621.40930430.099100.530804.270803.25140K562EIF4A3
RNF113AENSG00000125352.4779.36580993.40270-0.350103.614802.54370K562EIF4G2
RNF113AENSG00000125352.4153.21240317.55780-1.051505.104504.07780K562G3BP2
RNF113AENSG00000125352.4349.96320498.81680-0.511303.459002.80170K562HNRNPC
RNF113AENSG00000125352.41045.14990751.374000.476004.367603.30020K562KIF1C
RNF113AENSG00000125352.41123.35920841.729600.416304.099002.95810K562MBNL1
RNF113AENSG00000125352.4808.76560589.992000.454902.487201.66070K562NAA15
RNF113AENSG00000125352.4704.16600546.560900.365402.276301.53300K562PPIG
RNF113AENSG00000125352.41265.37400702.143200.8496011.5956010.53200K562PUS1
RNF113AENSG00000125352.4905.14700684.143500.403803.872303.18750K562RBM15
RNF113AENSG00000125352.4514.59740680.35470-0.402803.857202.77010K562SRPK2
RNF113AENSG00000125352.4226.97450317.65980-0.485002.312501.57990K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF113A is not available on ENCORE database.






No RBPs affect the alternative splcing events of RNF113A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RNF113A is not avaliable on ENCORE database.