PRTFDC1

General Information

Gene Name       : PRTFDC1
Gene ID             : ENSG00000099256.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRTFDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRTFDC1ENSG00000099256.188.848.548.69ENCSR000AEF
HepG2PRTFDC1ENSG00000099256.180.000.050.03ENCSR985KAT
K562PRTFDC1ENSG00000099256.187.718.388.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRTFDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRTFDC1 RNA is bound by 1 proteins.  







eCLIP assay for PRTFDC1 is not avaliable on ENCORE database.





1 proteins are bound to PRTFDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr102519768725197743-intron-Distal6.5220310.07916K562LARP7
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRTFDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRTFDC1 is not available on ENCORE database.

  • 27 RBPs can affect the levels of PRTFDC1.  








The Knockdown/knockout RNA-Seq assay for PRTFDC1 is not available on ENCORE database.





27 RBPs can affect the gene expression of PRTFDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRTFDC1ENSG00000099256.1487.33010306.17400-1.8098015.4303014.19780K562AQR
PRTFDC1ENSG00000099256.14144.18210219.22980-0.604602.332701.50060K562ATP5C1
PRTFDC1ENSG00000099256.14201.98140305.86060-0.598703.803303.05690K562DDX47
PRTFDC1ENSG00000099256.14113.45500191.01730-0.751602.488301.73320K562EIF3G
PRTFDC1ENSG00000099256.14100.68770155.30160-0.625202.390501.62560K562EIF4A3
PRTFDC1ENSG00000099256.14285.13470393.29640-0.464002.968101.99730K562EIF4G2
PRTFDC1ENSG00000099256.1468.82870161.50590-1.230507.061506.15570K562FXR1
PRTFDC1ENSG00000099256.14178.34910276.40370-0.632103.584702.36070K562HNRNPL
PRTFDC1ENSG00000099256.14327.67970239.558300.451802.539401.68170K562HNRNPU
PRTFDC1ENSG00000099256.1461.95140131.49320-1.085803.638302.55120K562KRR1
PRTFDC1ENSG00000099256.14156.27200229.20290-0.552602.655301.83220K562MAGOH
PRTFDC1ENSG00000099256.14564.77170419.207000.429902.636801.53660K562MSI2
PRTFDC1ENSG00000099256.1496.69810195.10070-1.012703.221602.13060K562PABPN1
PRTFDC1ENSG00000099256.14324.74330203.657500.673103.568502.62360K562PCBP3
PRTFDC1ENSG00000099256.14291.50170156.213100.899906.656005.42460K562POLR2G
PRTFDC1ENSG00000099256.14334.58250429.10970-0.359002.006501.31060K562PUF60
PRTFDC1ENSG00000099256.14622.45310456.470400.447303.097101.96710K562PUM1
PRTFDC1ENSG00000099256.14293.46410207.270700.501602.206201.70990K562PUS1
PRTFDC1ENSG00000099256.14104.86330196.70400-0.907505.364304.14630K562SF3B4
PRTFDC1ENSG00000099256.1499.79230221.99390-1.153508.470106.92940K562SRPK2
PRTFDC1ENSG00000099256.14128.14140197.22190-0.622103.178901.91930K562SRSF7
PRTFDC1ENSG00000099256.14146.86290220.94650-0.589202.640001.94700K562TARDBP
PRTFDC1ENSG00000099256.14120.64650197.18250-0.708703.135001.42810K562TBRG4
PRTFDC1ENSG00000099256.1482.66610159.90250-0.951803.945702.77320K562TRIM56
PRTFDC1ENSG00000099256.14130.57430189.37880-0.536402.245401.52260K562U2AF2
PRTFDC1ENSG00000099256.14253.17620153.917800.717903.475902.32710K562UCHL5
PRTFDC1ENSG00000099256.14300.58940232.792600.368601.934701.32590K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRTFDC1 is not available on ENCORE database.





3 RBPs can affect the splicing of PRTFDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRTFDC1ENSG00000099256.14chr10-252312582523136525226112252262962524145625241533-0.214000.000520.01865excludedK562AKAP8L
SEPRTFDC1ENSG00000099256.14chr10-252312582523136525226112252262962524145625241533-0.301000.000090.00214excludedK562PUS1
SEPRTFDC1ENSG00000099256.14chr10-252312582523136525226112252262962524145625241533-0.264000.000090.00516excludedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRTFDC1 is not avaliable on ENCORE database.