PRKCQ

General Information

Gene Name       : PRKCQ
Gene ID             : ENSG00000065675.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRKCQ)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRKCQENSG00000065675.140.700.820.76ENCSR000AEF
HepG2PRKCQENSG00000065675.140.380.420.40ENCSR985KAT
K562PRKCQENSG00000065675.1412.8412.3912.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRKCQ is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRKCQ RNA is bound by 5 proteins.  







eCLIP assay for PRKCQ is not avaliable on ENCORE database.





5 proteins are bound to PRKCQ RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1064691276469195-3'-UTR,intron-Distal,intron-Proximal5.401277.11441K562PUM2
chr1065529606553086-5'-UTR,CDS,intron-Distal4.522404.90367K562ZNF622
chr1065279766527999-CDS,intron-Distal,intron-Proximal4.739114.48002K562AQR
chr1066196476619784-intron-Distal3.381264.70224K562KHSRP
chr1066123706612421-intron-Distal4.254323.55787K562PTBP1
chr1065279516527976-intron-Distal,intron-Proximal4.895795.26064K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRKCQ is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRKCQ is not available on ENCORE database.

  • 27 RBPs can affect the levels of PRKCQ.  








The Knockdown/knockout RNA-Seq assay for PRKCQ is not available on ENCORE database.





27 RBPs can affect the gene expression of PRKCQ :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRKCQENSG00000065675.1057.699107.294302.983606.945606.14510HepG2AKAP1
PRKCQENSG00000065675.103.7888021.09330-2.477002.538901.95910HepG2ETF1
PRKCQENSG00000065675.1030.768306.722602.194303.616302.94690HepG2UTP3
PRKCQENSG00000065675.10489.61950637.85960-0.381603.047102.45530K562AGGF1
PRKCQENSG00000065675.10543.12440700.89630-0.367902.406401.49910K562AKAP8
PRKCQENSG00000065675.10478.59910663.71820-0.471803.455602.72310K562AKAP8L
PRKCQENSG00000065675.10679.83550873.43680-0.361502.485301.31570K562APOBEC3C
PRKCQENSG00000065675.10476.98440733.57000-0.621005.624404.83880K562AQR
PRKCQENSG00000065675.10324.07730464.66610-0.519903.094802.17070K562BOP1
PRKCQENSG00000065675.10303.72440481.84400-0.665804.165902.86600K562EIF3D
PRKCQENSG00000065675.10780.51860989.86770-0.342803.012702.03290K562EIF4G2
PRKCQENSG00000065675.10297.38690426.10380-0.518902.819101.89580K562FTO
PRKCQENSG00000065675.10549.73560836.98440-0.606505.948104.83700K562GRSF1
PRKCQENSG00000065675.10417.72790600.60540-0.523904.450703.09370K562HNRNPA1
PRKCQENSG00000065675.10246.21220505.99420-1.0392011.1471010.01700K562HNRNPC
PRKCQENSG00000065675.10320.39440451.88110-0.496102.980601.79280K562HNRNPF
PRKCQENSG00000065675.10456.37000587.95640-0.365502.883502.05830K562MTPAP
PRKCQENSG00000065675.10387.98040518.15830-0.417402.494801.56800K562PCBP2
PRKCQENSG00000065675.10398.33750574.55160-0.528403.341102.42730K562PCBP3
PRKCQENSG00000065675.10310.30780440.70960-0.506103.219902.35180K562POLR2G
PRKCQENSG00000065675.10309.81840453.68450-0.550304.027202.90820K562PSIP1
PRKCQENSG00000065675.10845.949701080.01670-0.352402.619301.82600K562PUF60
PRKCQENSG00000065675.10408.49490561.38440-0.458702.960202.22840K562TARDBP
PRKCQENSG00000065675.10276.99430436.36410-0.655704.162002.99360K562TIAL1
PRKCQENSG00000065675.10270.48700409.14950-0.597103.358402.12610K562U2AF1
PRKCQENSG00000065675.10246.78160422.49240-0.775707.000905.73160K562U2AF2
PRKCQENSG00000065675.10483.67380616.34630-0.349703.029002.14460K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRKCQ is not available on ENCORE database.





4 RBPs can affect the splicing of PRKCQ :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRKCQENSG00000065675.10chr10-647277164729006469982647032464838546484043-0.135000.000730.02443excludedK562AKAP8L
SEPRKCQENSG00000065675.10chr10-647277164729006469982647032464838546484043-0.204000.000010.00060excludedK562RBM15
A3SSPRKCQENSG00000065675.10chr10-6552956655319965529566553156655697965571300.097000.006000.03391longerK562AQR
MXEPRKCQENSG00000065675.10chr10-647277164729006483854648404364699826470324649863564987740.198000.000530.020551includedK562RBM15
MXEPRKCQENSG00000065675.10chr10-64727716472900648385464840436469982647032464986356498774-0.300000.000110.077902includedK562RPS3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRKCQ is not avaliable on ENCORE database.