NSUN3

General Information

Gene Name       : NSUN3
Gene ID             : ENSG00000178694.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NSUN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NSUN3ENSG00000178694.99.758.419.08ENCSR000AEF
HepG2NSUN3ENSG00000178694.92.393.943.17ENCSR985KAT
K562NSUN3ENSG00000178694.94.676.635.65ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NSUN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NSUN3 RNA is bound by 2 proteins.  







eCLIP assay for NSUN3 is not avaliable on ENCORE database.





2 proteins are bound to NSUN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr39380326593803368+CDS,intron-Proximal4.281203.31283K562PRPF8
chr39380324493803318+CDS,intron-Proximal6.249337.02967HepG2PRPF8
chr39381734393817468+intron-Distal4.308868.79983K562LSM11
chr39381734193817424+intron-Distal4.391045.03266HepG2LSM11
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NSUN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NSUN3 is not available on ENCORE database.

  • 18 RBPs can affect the levels of NSUN3.  








The Knockdown/knockout RNA-Seq assay for NSUN3 is not available on ENCORE database.





18 RBPs can affect the gene expression of NSUN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NSUN3ENSG00000178694.5187.83490132.310900.505402.205601.65010HepG2ACO1
NSUN3ENSG00000178694.5420.97960186.825401.172008.952508.05650HepG2AKAP1
NSUN3ENSG00000178694.595.02600153.72310-0.693902.211801.65360HepG2DDX6
NSUN3ENSG00000178694.5230.35160163.339700.495901.865001.33620HepG2EIF4A3
NSUN3ENSG00000178694.5120.03710187.71770-0.645102.950702.21090HepG2HNRNPF
NSUN3ENSG00000178694.5254.51210169.669300.584902.433701.83750HepG2NCBP2
NSUN3ENSG00000178694.5248.81190128.115400.957503.924003.08900HepG2RAVER1
NSUN3ENSG00000178694.5175.07190103.829800.753602.786001.99690HepG2RRP9
NSUN3ENSG00000178694.5275.14950177.760100.630202.587501.93470HepG2SF3A3
NSUN3ENSG00000178694.5272.90800164.058800.734104.480903.91490HepG2SRSF1
NSUN3ENSG00000178694.5105.97870151.30860-0.513701.902401.41750HepG2TRIM56
NSUN3ENSG00000178694.5255.29360141.076700.855604.706503.89880HepG2U2AF1
NSUN3ENSG00000178694.5174.71180118.347500.561802.280701.72270K562FXR1
NSUN3ENSG00000178694.5150.22650232.84940-0.632302.054401.39680K562GRSF1
NSUN3ENSG00000178694.5157.37660100.559200.646102.146101.48230K562PRPF8
NSUN3ENSG00000178694.5446.40530289.364400.625403.854302.89630K562PUF60
NSUN3ENSG00000178694.5215.45710140.933100.612302.502301.47110K562U2AF1
NSUN3ENSG00000178694.5221.25900145.525900.604403.049702.20620K562U2AF2
NSUN3ENSG00000178694.5124.94510188.59970-0.594002.633701.93290K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NSUN3 is not available on ENCORE database.





7 RBPs can affect the splicing of NSUN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENSUN3ENSG00000178694.5chr3+9378265593782968937819049378198293783280937833900.319000.000000.00003includedK562AKAP8L
SENSUN3ENSG00000178694.5chr3+9378265593782823937818549378198293783280937833620.517000.000000.00000includedK562PUS1
SENSUN3ENSG00000178694.5chr3+9378265593782968937819049378198293783280937833900.381000.000000.00011includedK562UTP18
SENSUN3ENSG00000178694.5chr3+937826559378296893781904937819829378328093783390-0.133000.004330.06462excludedK562U2AF2
SENSUN3ENSG00000178694.5chr3+9378265593782968937819049378198293783280937833900.321000.000000.00015includedK562RBM15
SENSUN3ENSG00000178694.5chr3+9378265593782968937819049378198293783280937833900.351000.000000.00000includedK562AGGF1
SENSUN3ENSG00000178694.5chr3+9378265593782968937819049378198293783280937833900.336000.000030.00223includedHepG2HNRNPC
SENSUN3ENSG00000178694.5chr3+9378265593782968937819049378198293783280937833900.741000.000000.00000includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NSUN3 is not avaliable on ENCORE database.