NOD1

General Information

Gene Name       : NOD1
Gene ID             : ENSG00000106100.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NOD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NOD1ENSG00000106100.107.237.287.26ENCSR000AEF
HepG2NOD1ENSG00000106100.101.562.231.90ENCSR985KAT
K562NOD1ENSG00000106100.103.043.213.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NOD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NOD1 RNA is bound by 1 proteins.  







eCLIP assay for NOD1 is not avaliable on ENCORE database.





1 proteins are bound to NOD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr73049155930491604-CDS,intron-Distal4.272624.48994K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NOD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NOD1 is not available on ENCORE database.

  • 33 RBPs can affect the levels of NOD1.  








The Knockdown/knockout RNA-Seq assay for NOD1 is not available on ENCORE database.





33 RBPs can affect the gene expression of NOD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NOD1ENSG00000106100.6150.4996074.011001.023805.391904.59810HepG2ACO1
NOD1ENSG00000106100.6133.8501067.915600.978703.073102.51640HepG2AKAP1
NOD1ENSG00000106100.6101.7948056.189000.857202.393601.65850HepG2ASCC1
NOD1ENSG00000106100.614.5202070.53110-2.280207.225706.31200HepG2BOP1
NOD1ENSG00000106100.622.2575064.74950-1.540603.855803.05610HepG2CPSF6
NOD1ENSG00000106100.6105.4237068.460900.622702.104301.36970HepG2DDX19B
NOD1ENSG00000106100.6107.5336065.046300.725101.863501.33960HepG2DDX3X
NOD1ENSG00000106100.634.8347076.02430-1.125903.152802.08000HepG2DDX5
NOD1ENSG00000106100.692.3008053.714200.780901.927301.42220HepG2EIF2S1
NOD1ENSG00000106100.686.93990133.94460-0.623502.322601.54380HepG2EIF4G1
NOD1ENSG00000106100.6184.4177090.998601.019004.025203.11130HepG2FIP1L1
NOD1ENSG00000106100.6170.9281059.918901.512208.283407.13590HepG2FXR1
NOD1ENSG00000106100.6108.4789055.562600.965103.090102.38870HepG2G3BP1
NOD1ENSG00000106100.6101.3916051.022600.990602.861101.51270HepG2ILF3
NOD1ENSG00000106100.6108.5434056.813800.933902.615901.64360HepG2KHSRP
NOD1ENSG00000106100.6102.8106059.940000.778302.025201.46030HepG2MAGOH
NOD1ENSG00000106100.6111.2494069.577500.677002.199601.70100HepG2PTBP1
NOD1ENSG00000106100.6152.6155093.899700.700602.799701.93890HepG2RBM15
NOD1ENSG00000106100.6139.6704077.435600.850903.160602.58960HepG2NELFE
NOD1ENSG00000106100.6121.4111072.116200.751402.452401.86790HepG2RECQL
NOD1ENSG00000106100.652.2283091.13320-0.803102.181601.56600HepG2RPLP0
NOD1ENSG00000106100.643.9004083.95900-0.935502.380901.50220HepG2RPS10
NOD1ENSG00000106100.676.16050123.21660-0.694102.651301.96240HepG2SLBP
NOD1ENSG00000106100.6118.5868075.614200.649101.929901.51460HepG2SRSF1
NOD1ENSG00000106100.6102.3265058.071100.817202.539001.30870HepG2SSRP1
NOD1ENSG00000106100.6143.6790067.958901.080005.236204.50620HepG2TAF15
NOD1ENSG00000106100.633.9413068.28260-1.008502.267801.60250HepG2TARDBP
NOD1ENSG00000106100.648.4281085.85150-0.826002.421601.78710HepG2ZC3H8
NOD1ENSG00000106100.6345.41170254.905700.438302.407001.87160K562AGGF1
NOD1ENSG00000106100.6227.23610140.817100.690303.841303.01530K562EIF2S2
NOD1ENSG00000106100.6158.7507085.419400.894003.673302.68390K562FMR1
NOD1ENSG00000106100.6123.57570208.85320-0.757103.991203.28400K562FXR1
NOD1ENSG00000106100.6116.01480190.41470-0.714802.897702.22060K562PTBP1
NOD1ENSG00000106100.671.07880120.39400-0.760302.503401.56400K562RCC2
NOD1ENSG00000106100.6185.87840117.873500.657002.547401.40140K562XRN2
NOD1ENSG00000106100.6307.87110229.199600.425602.151301.40110K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NOD1 is not available on ENCORE database.





3 RBPs can affect the splicing of NOD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENOD1ENSG00000106100.6chr7-304681193046822530464145304653263046898930469073-0.563000.000400.04809excludedK562FMR1
SENOD1ENSG00000106100.6chr7-3050322430503314304995163049965730518221305183580.160000.000540.03212includedK562EFTUD2
SENOD1ENSG00000106100.6chr7-304681193046822530464145304653263046898930469073-0.585000.003270.09796excludedK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NOD1 is not avaliable on ENCORE database.