LTK

General Information

Gene Name       : LTK
Gene ID             : ENSG00000062524.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LTK)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LTKENSG00000062524.150.020.150.08ENCSR000AEF
HepG2LTKENSG00000062524.150.000.000.00ENCSR985KAT
K562LTKENSG00000062524.151.932.092.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LTK is not avaliable on ENCORE database.



Proteins bound to RNA
  • LTK RNA is bound by 1 proteins.  







eCLIP assay for LTK is not avaliable on ENCORE database.





1 proteins are bound to LTK RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr154180374341803780-CDS,intron-Distal,intron-Proximal4.824215.05122K562DDX24
chr154179944741799531-CDS,intron-Distal,intron-Proximal5.4660415.98647K562DDX24
chr154180401441804029-CDS,intron-Distal,intron-Proximal5.515526.36664K562DDX24
chr154180346741803538-CDS,intron-Distal,intron-Proximal5.4926212.45999K562DDX24
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LTK is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LTK is not available on ENCORE database.

  • 43 RBPs can affect the levels of LTK.  








The Knockdown/knockout RNA-Seq assay for LTK is not available on ENCORE database.





43 RBPs can affect the gene expression of LTK :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LTKENSG00000062524.11610.98410410.492400.573704.770603.39360K562AKAP8
LTKENSG00000062524.11183.50950263.51740-0.522002.128001.60120K562AQR
LTKENSG00000062524.11130.7559044.343701.560007.665706.35240K562CPSF6
LTKENSG00000062524.11294.67100170.370000.790304.981603.32670K562DDX21
LTKENSG00000062524.11299.99300169.512500.823406.643504.33700K562DDX6
LTKENSG00000062524.11258.39050418.26330-0.694906.150904.76450K562DKC1
LTKENSG00000062524.11283.62700125.023501.1817010.645409.37460K562EIF2S2
LTKENSG00000062524.11111.4728067.717200.719002.292501.52010K562FIP1L1
LTKENSG00000062524.11110.5875045.130401.292904.831303.69870K562FMR1
LTKENSG00000062524.11109.3161038.257201.514606.224504.79880K562FTO
LTKENSG00000062524.1176.79470181.65950-1.242207.720806.77770K562FXR1
LTKENSG00000062524.1115.5047066.68320-2.104606.366005.19570K562G3BP2
LTKENSG00000062524.11196.6714042.332502.2158016.8385014.81330K562GPKOW
LTKENSG00000062524.11282.35960166.593400.761104.180103.25380K562GRSF1
LTKENSG00000062524.11191.10240104.645700.868703.958703.26020K562HNRNPC
LTKENSG00000062524.11255.78950181.981700.491102.421001.58500K562HNRNPU
LTKENSG00000062524.11292.1915091.790901.6704015.3482013.55670K562HSPD1
LTKENSG00000062524.11216.87080136.596000.666802.698601.68780K562IGF2BP2
LTKENSG00000062524.1177.51970143.59250-0.889304.146203.11240K562MAGOH
LTKENSG00000062524.11259.16740462.11370-0.834408.128606.40180K562MBNL1
LTKENSG00000062524.1176.0533041.323300.880002.065501.30770K562METAP2
LTKENSG00000062524.11249.80210152.813700.708904.008603.05100K562MTPAP
LTKENSG00000062524.11258.02770174.418500.564902.913701.65250K562NCBP2
LTKENSG00000062524.11178.13880265.11470-0.573603.076301.49970K562NOL12
LTKENSG00000062524.11354.98750169.756601.0642011.8071010.41370K562NSUN2
LTKENSG00000062524.11271.90020125.565401.114505.149903.43900K562PABPC1
LTKENSG00000062524.11318.36760182.435700.803203.122102.05410K562PABPN1
LTKENSG00000062524.1186.35290140.34450-0.700702.721001.38320K562PCBP1
LTKENSG00000062524.11129.6220076.892200.753302.748901.93080K562PPIG
LTKENSG00000062524.11160.7782093.841000.776702.690501.80130K562PSIP1
LTKENSG00000062524.1185.25240139.50650-0.710502.862102.18830K562PTBP1
LTKENSG00000062524.11395.50390275.525000.521402.478901.56910K562PUM2
LTKENSG00000062524.11290.93710167.555700.796002.524501.74290K562SF3A3
LTKENSG00000062524.1165.65090136.75890-1.058704.708703.79130K562SRSF1
LTKENSG00000062524.11228.61620129.148600.823804.750903.30600K562SRSF5
LTKENSG00000062524.11240.54150152.078200.661402.457001.35830K562SRSF7
LTKENSG00000062524.1171.75570137.80740-0.941504.027503.03170K562SYNCRIP
LTKENSG00000062524.11218.23440138.417500.656803.115202.36450K562TARDBP
LTKENSG00000062524.11241.02840133.517000.852105.222904.04780K562TIA1
LTKENSG00000062524.11254.8400090.250501.4975011.281709.28090K562TIAL1
LTKENSG00000062524.11545.20510179.999201.5987025.0357023.14130K562UPF1
LTKENSG00000062524.11290.41520154.015300.914907.059105.61890K562WDR3
LTKENSG00000062524.11579.56200296.841000.9652011.363309.47900K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LTK is not available on ENCORE database.





2 RBPs can affect the splicing of LTK :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RILTKENSG00000062524.11chr15-4179653941796838417965394179663041796703417968380.216000.000030.00427includedK562DROSHA
RILTKENSG00000062524.11chr15-4179653941796838417965394179663041796703417968380.188000.000080.01084includedK562NPM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LTK is not avaliable on ENCORE database.