HIST1H3D

General Information

Gene Name       : HIST1H3D
Gene ID             : ENSG00000197409.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HIST1H3D)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HIST1H3DENSG00000197409.70.000.000.00ENCSR000AEF
HepG2HIST1H3DENSG00000197409.70.000.070.04ENCSR985KAT
K562HIST1H3DENSG00000197409.70.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HIST1H3D is not avaliable on ENCORE database.



Proteins bound to RNA
  • HIST1H3D RNA is bound by 15 proteins.  







eCLIP assay for HIST1H3D is not avaliable on ENCORE database.





15 proteins are bound to HIST1H3D RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62619744126197488-3'-UTR,CDS,intron-Distal6.4136244.30815K562SLBP
chr62619746526197510-3'-UTR,CDS,intron-Distal3.2708416.60767K562NOLC1
chr62619743426197507-3'-UTR,CDS,intron-Distal6.4117575.78270HepG2SUB1
chr62619912626199132-5'-UTR,CDS,intron-Distal4.4134763.81132K562YBX3
chr62619947926199508-5'-UTR,intron-Distal3.197235.60293K562LSM11
chr62619948126199504-5'-UTR,intron-Distal3.2131816.19688K562DDX3X
chr62619913826199155-5'-UTR,CDS,intron-Distal3.3384511.79091K562RPS3
chr62619915426199169-5'-UTR,CDS,intron-Distal4.8804046.27655K562YBX3
chr62619907726199146-3'-UTR,5'-UTR,CDS,intron-Distal6.29208400.00000K562SLBP
chr62619920126199228-5'-UTR,CDS,intron-Distal4.660453.96931HepG2G3BP1
chr62619908026199102-3'-UTR,5'-UTR,CDS,intron-Distal4.1749625.37790K562YBX3
chr62619910626199142-5'-UTR,CDS,intron-Distal3.553535.02671K562PUM1
chr62619911026199114-5'-UTR,CDS,intron-Distal3.001059.17526K562YBX3
chr62619924726199289-5'-UTR,CDS,intron-Distal4.209279.14494K562PUM1
chr62619909226199162-5'-UTR,CDS,intron-Distal3.4044314.93521HepG2GRWD1
chr62619945326199488-5'-UTR,CDS,intron-Distal3.108777.78944K562GEMIN5
chr62619927126199304-5'-UTR,CDS,intron-Distal5.3120617.60264HepG2RPS3
chr62619919026199240-5'-UTR,CDS,intron-Distal4.0678213.43533HepG2GRWD1
chr62619909626199162-5'-UTR,CDS,intron-Distal5.366094.65414HepG2SND1
chr62619913226199154-5'-UTR,CDS,intron-Distal4.5531572.95086K562YBX3
chr62619932226199361-5'-UTR,CDS,intron-Distal5.4460420.31541HepG2RPS3
chr62619925526199295-5'-UTR,CDS,intron-Distal3.2889911.11589HepG2GRWD1
chr62619911426199126-5'-UTR,CDS,intron-Distal4.0294441.91357K562YBX3
chr62619936126199413-5'-UTR,CDS,intron-Distal5.8702426.35122HepG2RPS3
chr62619911726199161-5'-UTR,CDS,intron-Distal4.9099519.37398K562RBM15
chr62619933326199413-5'-UTR,CDS,intron-Distal4.8540061.95047K562RPS3
chr62619912426199142-5'-UTR,CDS,intron-Distal3.844429.49363HepG2RPS3
chr62619909626199160-5'-UTR,CDS,intron-Distal3.071365.22550HepG2G3BP1
chr62619919526199234-5'-UTR,CDS,intron-Distal4.749994.35919HepG2SND1
chr62619942426199479-5'-UTR,CDS,intron-Distal3.6761712.53882HepG2GRWD1
chr62619910526199157-5'-UTR,CDS,intron-Distal4.0892514.53471K562ZNF800
chr62619919626199247-5'-UTR,CDS,intron-Distal6.0345510.97921K562PUM1
chr62619707026197092-CDS,intron-Distal5.0599221.10281K562RBM15
chr62619719526197220-CDS,intron-Distal3.015945.46884K562GEMIN5
chr62619717326197215-CDS,intron-Distal3.7942614.96130HepG2RPS3
chr62619713026197158-CDS,intron-Distal6.3649222.94940K562RBM15
chr62619707626197124-CDS,intron-Distal5.86859400.00000K562SLBP
chr62619709226197097-CDS,intron-Distal5.4889519.42899K562RBM15
chr62619709126197113-CDS,intron-Distal3.9832510.98347HepG2SUB1
chr62619721926197225-CDS,intron-Distal4.9228247.38216K562RBM15
chr62619718226197219-CDS,intron-Distal5.5046968.39921K562RBM15
chr62619716826197182-CDS,intron-Distal7.0282533.06047K562RBM15
chr62619717426197232-CDS,intron-Distal3.8245815.37444HepG2SUB1
chr62619708126197120-CDS,intron-Distal4.374099.14186K562NOLC1
chr62619906926199080-3'-UTR,intron-Distal3.8862718.19224K562YBX3
chr62619906726199069-intron-Distal4.0212018.03186K562YBX3
chr62619904126199079-intron-Distal4.692589.78712K562AQR
chr62619901726199077-intron-Distal9.72480276.20086K562SLBP
chr62619901526199041-intron-Distal3.945564.52312K562AQR
chr62619896726199007-intron-Distal4.812079.00428K562LSM11
chr62619900726199054-intron-Distal3.503215.72365K562LSM11
chr62619901226199017-intron-Distal10.02520161.50830K562SLBP
chr62619907926199087-3'-UTR,CDS,intron-Distal3.688274.20978K562AQR
chr62619902426199047-intron-Distal4.453803.59284HepG2LSM11
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HIST1H3D is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HIST1H3D is not available on ENCORE database.

  • 42 RBPs can affect the levels of HIST1H3D.  








The Knockdown/knockout RNA-Seq assay for HIST1H3D is not available on ENCORE database.





42 RBPs can affect the gene expression of HIST1H3D :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HIST1H3DENSG00000197409.625.549007.612601.746702.388301.81680HepG2ACO1
HIST1H3DENSG00000197409.641.580007.620402.447805.570504.68690HepG2CKAP4
HIST1H3DENSG00000197409.620.325904.582202.149102.243701.61590HepG2CPSF6
HIST1H3DENSG00000197409.613.233100.0000099999.999903.477202.70600HepG2HNRNPC
HIST1H3DENSG00000197409.66.937400.0000099999.999902.117401.57880HepG2HNRNPU
HIST1H3DENSG00000197409.628.144306.673902.076102.740501.91490HepG2LARP4
HIST1H3DENSG00000197409.630.628102.269303.754502.702301.62240HepG2NONO
HIST1H3DENSG00000197409.647.0974012.779101.881804.146603.54530HepG2RBM22
HIST1H3DENSG00000197409.628.918304.644502.638303.972003.17790HepG2RPLP0
HIST1H3DENSG00000197409.691.518902.085605.4554022.0910020.14360HepG2SF3A3
HIST1H3DENSG00000197409.67.775700.0000099999.999902.259901.66920HepG2SMN1
HIST1H3DENSG00000197409.620.440304.234902.270902.744102.05060HepG2SRSF7
HIST1H3DENSG00000197409.634.362900.0000099999.999906.634205.92050HepG2TIAL1
HIST1H3DENSG00000197409.623.748902.034203.545204.933204.25550HepG2ZNF622
HIST1H3DENSG00000197409.6153.4258048.146701.671906.614805.10010K562BCLAF1
HIST1H3DENSG00000197409.697.9737040.091001.289002.275701.49090K562BOP1
HIST1H3DENSG00000197409.671.9195034.333001.066702.827501.53130K562CIRBP
HIST1H3DENSG00000197409.6222.44540124.592500.836104.114802.29580K562CKAP4
HIST1H3DENSG00000197409.6114.4757036.526501.647906.645104.90150K562CSTF2
HIST1H3DENSG00000197409.639.7288097.00620-1.287903.749401.51950K562DAZAP1
HIST1H3DENSG00000197409.6123.0376048.810401.333705.365103.02700K562DDX51
HIST1H3DENSG00000197409.658.77720159.40510-1.439406.156004.76830K562DKC1
HIST1H3DENSG00000197409.692.9056045.163501.040502.670101.77480K562EFTUD2
HIST1H3DENSG00000197409.6133.7070048.337101.467806.278504.62690K562EIF3D
HIST1H3DENSG00000197409.62.2096019.80440-3.163903.405002.60480K562G3BP2
HIST1H3DENSG00000197409.6176.4351083.058401.086803.118601.80070K562HNRNPA2B1
HIST1H3DENSG00000197409.6205.4725080.465701.352408.401407.41180K562HNRNPC
HIST1H3DENSG00000197409.6313.05400139.517201.1659011.398309.61530K562HNRNPU
HIST1H3DENSG00000197409.6120.3667032.052501.908806.243904.43990K562IGF2BP2
HIST1H3DENSG00000197409.666.0315032.594201.018402.757801.56940K562IGF2BP3
HIST1H3DENSG00000197409.639.1378078.01730-0.995202.758801.37360K562LARP7
HIST1H3DENSG00000197409.691.1448033.667101.436702.505701.70410K562MAGOH
HIST1H3DENSG00000197409.659.31910123.46000-1.057502.762801.88000K562NAA15
HIST1H3DENSG00000197409.6107.6446029.952001.845505.743504.32510K562PCBP2
HIST1H3DENSG00000197409.6197.8662032.711102.5966025.4209023.48930K562PTBP1
HIST1H3DENSG00000197409.679.39590211.49850-1.413502.269601.31290K562PUM1
HIST1H3DENSG00000197409.686.3355031.355801.461105.491704.25930K562RBM22
HIST1H3DENSG00000197409.669.2083032.999401.068402.871501.75550K562NELFE
HIST1H3DENSG00000197409.6193.8070095.763201.017002.437601.42550K562SAFB
HIST1H3DENSG00000197409.6247.32640173.596500.510602.653801.85460K562SF3A3
HIST1H3DENSG00000197409.6146.2335072.976201.002703.607701.59350K562SMN1
HIST1H3DENSG00000197409.6193.9901032.069902.5966021.9839019.99980K562SRSF1
HIST1H3DENSG00000197409.6137.1481064.034001.098704.158802.82990K562SRSF4
HIST1H3DENSG00000197409.680.1249030.292901.403204.751703.30620K562SRSF5
HIST1H3DENSG00000197409.6117.0166042.527901.460105.642004.15410K562SUPV3L1
HIST1H3DENSG00000197409.670.8046032.452301.125403.096902.34720K562TARDBP
HIST1H3DENSG00000197409.685.8970031.305101.456105.097903.93590K562TIA1
HIST1H3DENSG00000197409.696.9234045.023001.106103.323302.20040K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HIST1H3D is not available on ENCORE database.






No RBPs affect the alternative splcing events of HIST1H3D on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HIST1H3D is not avaliable on ENCORE database.