HDAC9

General Information

Gene Name       : HDAC9
Gene ID             : ENSG00000048052.21
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HDAC9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HDAC9ENSG00000048052.211.040.630.83ENCSR000AEF
HepG2HDAC9ENSG00000048052.210.000.020.01ENCSR985KAT
K562HDAC9ENSG00000048052.210.460.220.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HDAC9 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on HDAC9 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for HDAC9 is not avaliable on ENCORE database.






NO known proteins are bound to HDAC9 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for HDAC9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HDAC9 is not available on ENCORE database.

  • 25 RBPs can affect the levels of HDAC9.  








The Knockdown/knockout RNA-Seq assay for HDAC9 is not available on ENCORE database.





25 RBPs can affect the gene expression of HDAC9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HDAC9ENSG00000048052.1720.502004.897902.065402.405601.83180HepG2ACO1
HDAC9ENSG00000048052.1733.972201.791204.245205.904605.16120HepG2AKAP1
HDAC9ENSG00000048052.1729.807504.922202.598202.865202.08580HepG2AKAP8L
HDAC9ENSG00000048052.1717.809804.898301.862201.873801.31210HepG2CKAP4
HDAC9ENSG00000048052.1761.243701.524705.327903.555102.78010HepG2EIF4B
HDAC9ENSG00000048052.1720.911604.787502.126902.452801.66520HepG2EWSR1
HDAC9ENSG00000048052.1718.198901.580903.525003.234102.48760HepG2FXR1
HDAC9ENSG00000048052.1741.001906.658402.622405.121003.97750HepG2LARP4
HDAC9ENSG00000048052.1714.682301.624103.176302.277601.54140HepG2PRPF8
HDAC9ENSG00000048052.1716.386300.436705.229504.102703.46600HepG2PTBP1
HDAC9ENSG00000048052.17134.792902.844105.5665026.1701024.22280HepG2RAVER1
HDAC9ENSG00000048052.170.311008.24390-4.728502.087501.32900HepG2RBM15
HDAC9ENSG00000048052.17455.317907.923105.8446015.5103014.48660HepG2RBM22
HDAC9ENSG00000048052.1716.432100.486405.078001.770501.31720HepG2NELFE
HDAC9ENSG00000048052.1744.4422010.412602.093504.783803.91820HepG2RPLP0
HDAC9ENSG00000048052.1730.180903.699603.028104.500003.73600HepG2RPS19
HDAC9ENSG00000048052.1721.824305.176602.075802.332401.35080HepG2RPS5
HDAC9ENSG00000048052.1712.891800.455604.822502.899502.29710HepG2SF3B4
HDAC9ENSG00000048052.1737.930905.977202.665705.584304.72200HepG2SMN1
HDAC9ENSG00000048052.1758.645608.948602.712208.081807.34890HepG2SRFBP1
HDAC9ENSG00000048052.1746.737000.475206.6199011.8412011.00880HepG2SRSF1
HDAC9ENSG00000048052.177.319500.386304.244001.812801.34870HepG2SRSF9
HDAC9ENSG00000048052.1728.130303.576402.975404.900904.22570HepG2ZNF622
HDAC9ENSG00000048052.1793.097606.359803.8716018.0397016.43640K562EIF2S2
HDAC9ENSG00000048052.1735.297208.520102.050503.365702.48950K562HSPD1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HDAC9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HDAC9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HDAC9 is not avaliable on ENCORE database.