GPC2

General Information

Gene Name       : GPC2
Gene ID             : ENSG00000213420.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GPC2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GPC2ENSG00000213420.70.150.670.41ENCSR000AEF
HepG2GPC2ENSG00000213420.70.890.430.66ENCSR985KAT
K562GPC2ENSG00000213420.71.240.901.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GPC2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GPC2 RNA is bound by 1 proteins.  







eCLIP assay for GPC2 is not avaliable on ENCORE database.





1 proteins are bound to GPC2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79976946599769532-CDS,intron-Distal3.970443.20743HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GPC2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GPC2 is not available on ENCORE database.

  • 38 RBPs can affect the levels of GPC2.  








The Knockdown/knockout RNA-Seq assay for GPC2 is not available on ENCORE database.





38 RBPs can affect the gene expression of GPC2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GPC2ENSG00000213420.360.1786022.336201.429802.854002.31400HepG2AKAP1
GPC2ENSG00000213420.3101.0282033.400701.596704.777603.79290HepG2DDX55
GPC2ENSG00000213420.351.5996018.380501.489102.969302.33190HepG2DDX6
GPC2ENSG00000213420.3105.6118019.011802.473709.542508.30380HepG2EIF4B
GPC2ENSG00000213420.359.1256019.701801.585403.693802.90310HepG2FXR1
GPC2ENSG00000213420.358.0652018.275701.667604.194403.38400HepG2G3BP1
GPC2ENSG00000213420.310.2832029.09360-1.500401.841901.31840HepG2HNRNPLL
GPC2ENSG00000213420.358.9198018.576701.665203.925303.13470HepG2IGF2BP2
GPC2ENSG00000213420.389.9401017.434202.366902.998101.97480HepG2IGF2BP3
GPC2ENSG00000213420.361.2921019.818801.628703.695202.97670HepG2MATR3
GPC2ENSG00000213420.37.4046025.79890-1.800801.984101.34580HepG2NSUN2
GPC2ENSG00000213420.3123.0716022.434002.4556014.2140013.16300HepG2PTBP1
GPC2ENSG00000213420.319.5944041.02110-1.065901.902201.37190HepG2PUS1
GPC2ENSG00000213420.3191.1511054.632401.8068013.1478012.18570HepG2RBM22
GPC2ENSG00000213420.370.5116024.969501.497603.966503.34050HepG2NELFE
GPC2ENSG00000213420.364.5077023.250901.472103.739903.03800HepG2RECQL
GPC2ENSG00000213420.357.4988020.801801.466703.365302.69550HepG2RPS19
GPC2ENSG00000213420.319.1578043.18010-1.172402.114201.48650HepG2SLBP
GPC2ENSG00000213420.370.3748025.527401.462904.609503.81450HepG2SMN1
GPC2ENSG00000213420.35.9196032.04060-2.436303.409502.53710HepG2SNRNP70
GPC2ENSG00000213420.3112.6283061.704100.868003.039302.52210HepG2SRFBP1
GPC2ENSG00000213420.323.1093053.57170-1.213002.786902.27310HepG2SSB
GPC2ENSG00000213420.349.4306021.909801.173702.290501.77220HepG2TAF15
GPC2ENSG00000213420.357.8791028.290401.032602.158801.61610HepG2UTP3
GPC2ENSG00000213420.310.6679032.22710-1.595002.688402.14750HepG2ZNF622
GPC2ENSG00000213420.315.7240041.04180-1.384102.452601.34690K562AARS
GPC2ENSG00000213420.3136.7478082.003200.737702.784802.21510K562AGGF1
GPC2ENSG00000213420.332.3325082.52180-1.351803.434802.79560K562AQR
GPC2ENSG00000213420.338.3908072.68860-0.921002.267301.52200K562EIF4A3
GPC2ENSG00000213420.353.2320093.20730-0.808202.266201.41240K562EIF4G2
GPC2ENSG00000213420.371.1568035.667700.996302.621701.39170K562EXOSC5
GPC2ENSG00000213420.331.5540075.59440-1.260503.646002.96610K562FXR1
GPC2ENSG00000213420.35.5241025.98830-2.234103.013702.27030K562G3BP2
GPC2ENSG00000213420.3156.41680101.441800.624602.421501.57820K562MBNL1
GPC2ENSG00000213420.38.5916034.79150-2.017702.374701.63390K562POLR2G
GPC2ENSG00000213420.311.4126037.59830-1.720002.763002.01490K562PRPF8
GPC2ENSG00000213420.3108.8516040.237401.435705.213803.91920K562PSIP1
GPC2ENSG00000213420.3127.9967070.691500.856403.462802.55580K562SF3A3
GPC2ENSG00000213420.3132.9048069.913500.926602.783601.47870K562SFPQ
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GPC2 is not available on ENCORE database.





3 RBPs can affect the splicing of GPC2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGPC2ENSG00000213420.3chr7-9977319499773517997723079977238899773829997739880.368000.001600.04532includedK562AKAP8L
SEGPC2ENSG00000213420.3chr7-9977319499773517997723079977238899773829997739880.341000.001510.03838includedK562AGGF1
SEGPC2ENSG00000213420.3chr7-9977319499773517997723079977238899773829997739880.841000.000490.09466includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GPC2 is not avaliable on ENCORE database.