CTD-2535L24.2

General Information

Gene Name       : CTD-2535L24.2
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-2535L24.2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-2535L24.2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-2535L24.2 RNA is bound by 29 proteins.  







eCLIP assay for CTD-2535L24.2 is not avaliable on ENCORE database.





29 proteins are bound to CTD-2535L24.2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr176353756263537615-3'-UTR,CDS,intron-Distal,intron-Proximal5.1554657.52996HepG2PRPF8
chr176354575163545780-3'-UTR,CDS,intron-Distal,intron-Proximal4.487559.10443HepG2PRPF8
chr176355411863554166-3'-UTR,CDS,intron-Distal,intron-Proximal3.191536.80151HepG2BCLAF1
chr176355412563554155-3'-UTR,CDS,intron-Distal,intron-Proximal3.663536.67001HepG2RBM15
chr176353428563534320-3'-UTR,intron-Distal,intron-Proximal3.219743.01637HepG2AQR
chr176355393863554005-3'-UTR,CDS,intron-Distal4.0834213.23699HepG2BCLAF1
chr176354575463545846-3'-UTR,CDS,intron-Distal,intron-Proximal5.0851114.98569HepG2AQR
chr176354575163545839-3'-UTR,CDS,intron-Distal,intron-Proximal3.8314026.52894HepG2BUD13
chr176355386763553926-3'-UTR,CDS,intron-Distal,intron-Proximal4.144525.56912HepG2AQR
chr176353765263537728-3'-UTR,CDS,intron-Distal,intron-Proximal3.4268816.70631HepG2BUD13
chr176355454363554580-3'-UTR,CDS,intron-Distal3.652177.07978HepG2RBM15
chr176355392863554009-3'-UTR,CDS,intron-Distal3.0086810.48792HepG2PPIG
chr176355400563554043-3'-UTR,CDS,intron-Distal4.7000712.88094HepG2BCLAF1
chr176353436663534447-3'-UTR,CDS,intron-Distal3.847375.82826HepG2PRPF4
chr176355480763554894-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.0135226.50458HepG2U2AF2
chr176353432963534418-3'-UTR,CDS,intron-Distal3.4755925.01338HepG2PPIG
chr176354573563545792-3'-UTR,CDS,intron-Distal,intron-Proximal3.4098618.51070HepG2U2AF2
chr176355392463553962-3'-UTR,CDS,intron-Distal3.5302211.16708HepG2PRPF8
chr176355419363554224-3'-UTR,CDS,intron-Distal,intron-Proximal3.969145.79432HepG2BCLAF1
chr176355438763554461-3'-UTR,CDS,intron-Distal3.160258.94850HepG2GRWD1
chr176355484463554936-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.544713.13970HepG2SF3B4
chr176353422263534270-3'-UTR,intron-Distal,intron-Proximal3.373645.81579HepG2RBFOX2
chr176353417763534229-3'-UTR,intron-Distal,intron-Proximal3.309805.07958HepG2GRSF1
chr176354569963545728-3'-UTR,CDS,intron-Distal3.016384.91547HepG2GRWD1
chr176355393663554028-3'-UTR,CDS,intron-Distal3.6412210.78389HepG2GRWD1
chr176353444463534488-3'-UTR,CDS,intron-Distal,intron-Proximal3.3569314.84964HepG2PRPF8
chr176353427463534310-3'-UTR,intron-Distal,intron-Proximal4.3288824.19797HepG2PRPF8
chr176355447863554543-3'-UTR,CDS,intron-Distal4.3414316.19296HepG2RBM15
chr176355426863554317-3'-UTR,CDS,intron-Distal,intron-Proximal3.070996.81934HepG2GRWD1
chr176355467463554719-3'-UTR,CDS,intron-Distal3.156963.72699HepG2PRPF4
chr176355403663554091-3'-UTR,CDS,intron-Distal,intron-Proximal3.902818.97406HepG2GRWD1
chr176353421963534247-3'-UTR,intron-Distal,intron-Proximal3.830223.52163HepG2IGF2BP1
chr176355440863554435-3'-UTR,CDS,intron-Distal5.277947.62496HepG2RBM15
chr176355404363554109-3'-UTR,CDS,intron-Distal,intron-Proximal3.274659.80919HepG2BCLAF1
chr176353431063534320-3'-UTR,intron-Distal,intron-Proximal3.8985516.97964HepG2PRPF8
chr176355400863554098-3'-UTR,CDS,intron-Distal,intron-Proximal3.056838.32755HepG2RBM15
chr176353432263534416-3'-UTR,CDS,intron-Distal4.9179326.46054HepG2GRWD1
chr176354559163545641-3'-UTR,CDS,intron-Distal,intron-Proximal4.478666.92290HepG2AQR
chr176353744163537504-intron-Distal,intron-Proximal3.406476.76873HepG2AQR
chr176355552763555582-5'-UTR,intron-Distal4.013863.59983HepG2DROSHA
chr176354754163547611-intron-Distal4.2185618.42726HepG2HNRNPK
chr176353452863534566-intron-Distal,intron-Proximal3.541333.81705HepG2SF3B4
chr176355527863555387-intron-Distal3.227515.04017HepG2HNRNPUL1
chr176354726663547313-intron-Distal4.4690521.53164HepG2HNRNPK
chr176353754463537570-intron-Distal,intron-Proximal4.654204.62947HepG2AQR
chr176354397263544033-intron-Distal3.973458.93039HepG2HNRNPM
chr176353752163537562-intron-Distal,intron-Proximal6.4521459.95723HepG2PRPF8
chr176355581163555871-intron-Distal4.334689.20848HepG2HNRNPM
chr176355249763552592-intron-Distal3.6430018.98405HepG2HNRNPM
chr176355519663555231-intron-Distal3.061874.05157HepG2FKBP4
chr176353940463539465-intron-Distal4.143377.17878HepG2HNRNPM
chr176355644763556517-intron-Distal,intron-Proximal5.1613825.60862HepG2PCBP2
chr176355387663553924-intron-Distal,intron-Proximal5.7111835.49077HepG2PRPF8
chr176354369363543739-intron-Distal3.419644.25236HepG2HNRNPM
chr176355566663555719-intron-Distal,intron-Proximal5.0563916.98069HepG2FAM120A
chr176354442863544483-intron-Distal4.0705213.92113HepG2HNRNPM
chr176355679363556835-intron-Distal3.6961612.63110HepG2CSTF2T
chr176355566363555704-intron-Distal,intron-Proximal3.374623.29341HepG2HNRNPUL1
chr176355530563555390-intron-Distal3.309904.34058HepG2DROSHA
chr176355533963555388-intron-Distal3.353143.38341HepG2RBM5
chr176355629763556343-5'-UTR,intron-Distal3.028777.06677HepG2CSTF2T
chr176355617063556215-5'-UTR,intron-Distal4.078329.09300HepG2DDX3X
chr176355644163556510-intron-Distal,intron-Proximal3.7071615.03418HepG2CSTF2T
chr176355690363556929-intron-Distal4.652285.32906HepG2AQR
chr176354562463545637-intron-Distal,intron-Proximal4.7500216.12323HepG2PRPF8
chr176355735263557398-intron-Distal,intron-Proximal4.5066210.05876HepG2CSTF2T
chr176355559163555621-5'-UTR,intron-Distal,intron-Proximal3.047644.49282HepG2HNRNPM
chr176355518863555250-intron-Distal4.0689315.71972HepG2CSTF2T
chr176355555063555608-5'-UTR,intron-Distal3.176434.08364HepG2GTF2F1
chr176355546963555511-intron-Distal3.095613.40381HepG2DROSHA
chr176354527463545317-intron-Distal5.157928.60156HepG2HNRNPM
chr176353411563534204-intron-Distal,intron-Proximal4.7179011.57060HepG2RBFOX2
chr176354731363547371-intron-Distal5.8237730.52373HepG2HNRNPK
chr176355683563556874-intron-Distal3.7900412.79738HepG2CSTF2T
chr176355534863555383-intron-Distal4.2186314.14825HepG2PRPF4
chr176355529663555389-intron-Distal5.8483411.36630HepG2GTF2F1
chr176355533363555404-intron-Distal3.687638.58287HepG2PCBP2
chr176355573463555799-intron-Distal4.606378.02251HepG2HNRNPM
chr176354209863542171-intron-Distal4.6997110.54644HepG2GTF2F1
chr176354477563544825-intron-Distal5.8321214.51226HepG2HNRNPM
chr176355610063556147-5'-UTR,intron-Distal3.233667.17533HepG2HNRNPM
chr176355061763550653-intron-Distal4.719384.66899HepG2HNRNPM
chr176355047663550517-intron-Distal5.4469010.99895HepG2HNRNPM
chr176355487463554933-intron-Distal,intron-Proximal3.832273.96535HepG2AQR
chr176355382863553870-intron-Distal,intron-Proximal3.333466.55956HepG2RBM15
chr176355690563556942-intron-Distal3.422736.74268HepG2PRPF8
chr176355551463555599-5'-UTR,intron-Distal3.1510011.53650HepG2FAM120A
chr176355554363555572-5'-UTR,intron-Distal3.352674.49282HepG2HNRNPM
chr176355517563555230-intron-Distal3.288587.02411HepG2NKRF
chr176355532563555378-intron-Distal3.537784.03335HepG2CDC40
chr176355671563556739-intron-Distal,intron-Proximal3.234834.98353HepG2CSTF2T
chr176355565463555724-intron-Distal,intron-Proximal5.060648.29787HepG2PRPF4
chr176355692963556943-intron-Distal4.867475.68078HepG2AQR
chr176355734763557418-intron-Distal,intron-Proximal4.096944.13073HepG2GTF2F1
chr176353775663537828-intron-Distal,intron-Proximal3.213233.10102HepG2SF3B4
chr176353927363539320-intron-Distal4.245034.17759HepG2QKI
chr176354209963542236-intron-Distal6.1536721.49244HepG2PRPF4
chr176354763263547691-intron-Distal3.735709.35789HepG2PCBP2
chr176355531763555343-intron-Distal3.115733.68924HepG2PRPF4
chr176355637263556412-5'-UTR,intron-Distal3.497405.44438HepG2DDX3X
chr176355025563550298-intron-Distal3.892006.18434HepG2HNRNPM
chr176355664763556689-5'-UTR,intron-Distal,intron-Proximal4.819154.84783HepG2FKBP4
chr176355052763550589-intron-Distal3.153449.15317HepG2HNRNPM
chr176355129463551354-intron-Distal4.3807218.23932HepG2HNRNPM
chr176355276963552810-intron-Distal4.3181012.72001HepG2HNRNPM
chr176354388963543938-intron-Distal3.347324.01262HepG2HNRNPM
chr176355547563555527-intron-Distal4.958298.30587HepG2PRPF4
chr176354772163547758-intron-Distal4.567285.38060HepG2HNRNPK
chr176354471863544775-intron-Distal3.9869913.24316HepG2HNRNPM
chr176354578563545857-intron-Distal,intron-Proximal3.8596211.49378HepG2SF3B4
chr176355092063550951-intron-Distal4.490714.90578HepG2HNRNPM
chr176354557363545624-intron-Distal,intron-Proximal3.7769022.20924HepG2PRPF8
chr176355663163556693-5'-UTR,intron-Distal,intron-Proximal3.4685010.07222HepG2CSTF2T
chr176355663563556673-5'-UTR,intron-Distal3.512163.01293HepG2NKRF
chr176355713863557163-5'-UTR,intron-Distal3.293135.45050HepG2CSTF2T
chr176355734763557402-intron-Distal,intron-Proximal4.194656.90648HepG2FAM120A
chr176355538363555390-intron-Distal3.649888.37089HepG2PRPF4
chr176355679963556854-intron-Distal3.346027.96158HepG2FAM120A
chr176353935763539395-intron-Distal3.153403.31508HepG2HNRNPM
chr176355226763552299-intron-Distal3.477945.72132HepG2HNRNPM
chr176355552263555568-5'-UTR,intron-Distal4.2284911.65011HepG2CSTF2T
chr176354557363545610-intron-Distal,intron-Proximal3.4138110.90644HepG2RBM22
chr176355567463555708-intron-Distal,intron-Proximal3.582193.68836HepG2FKBP4
chr176354578363545830-intron-Distal,intron-Proximal4.7049724.32860HepG2SF3A3
chr176353956463539619-intron-Distal3.616154.87260HepG2HNRNPM
chr176355603563556084-5'-UTR,intron-Distal5.355939.91322HepG2AQR
chr176355532663555393-intron-Distal3.693385.17868HepG2FKBP4
chr176355532063555398-intron-Distal3.3748215.83577HepG2CSTF2T
chr176355735863557413-intron-Distal,intron-Proximal4.103397.25311HepG2NKRF
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-2535L24.2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-2535L24.2 is not available on ENCORE database.

  • 17 RBPs can affect the levels of CTD-2535L24.2.  








The Knockdown/knockout RNA-Seq assay for CTD-2535L24.2 is not available on ENCORE database.





17 RBPs can affect the gene expression of CTD-2535L24.2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTD-2535L24.2ENSG00000266076.110.718200.0000099999.999902.666701.68620HepG2ADAR
CTD-2535L24.2ENSG00000266076.10.0000010.85860-99999.999993.378801.53610HepG2APOBEC3C
CTD-2535L24.2ENSG00000266076.18.663500.0000099999.999902.590301.94240HepG2CKAP4
CTD-2535L24.2ENSG00000266076.10.0000011.62890-99999.999993.529002.65900HepG2CNOT7
CTD-2535L24.2ENSG00000266076.10.0000010.07230-99999.999993.326601.65160HepG2HNRNPD
CTD-2535L24.2ENSG00000266076.10.0000011.07250-99999.999993.659702.25710HepG2KHDRBS1
CTD-2535L24.2ENSG00000266076.113.608300.0000099999.999902.681101.92960HepG2NOL12
CTD-2535L24.2ENSG00000266076.10.0000010.62620-99999.999993.275302.30500HepG2PABPC1
CTD-2535L24.2ENSG00000266076.10.0000010.42670-99999.999993.418001.71880HepG2PNPT1
CTD-2535L24.2ENSG00000266076.110.368100.0000099999.999902.618401.83110HepG2PRPF8
CTD-2535L24.2ENSG00000266076.110.873800.0000099999.999903.237902.65530HepG2PTBP1
CTD-2535L24.2ENSG00000266076.112.281500.0000099999.999903.866703.07730HepG2PUM2
CTD-2535L24.2ENSG00000266076.115.344503.237402.244702.011301.55100HepG2RBM22
CTD-2535L24.2ENSG00000266076.10.0000011.22880-99999.999993.637301.88530HepG2RBM47
CTD-2535L24.2ENSG00000266076.115.614500.0000099999.999904.665603.77650HepG2SF3A3
CTD-2535L24.2ENSG00000266076.16.686000.0000099999.999902.161001.60010HepG2SRSF5
CTD-2535L24.2ENSG00000266076.115.176400.0000099999.999905.177604.46470HepG2SRSF9
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTD-2535L24.2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTD-2535L24.2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTD-2535L24.2 is not avaliable on ENCORE database.