CTC-360G5.8

General Information

Gene Name       : CTC-360G5.8
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTC-360G5.8)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTC-360G5.8 is not avaliable on ENCORE database.



Proteins bound to RNA

  • CTC-360G5.8 RNA is bound by 31 proteins.  







eCLIP assay for CTC-360G5.8 is not avaliable on ENCORE database.





31 proteins are bound to CTC-360G5.8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193940609139406149-3'-UTR,CDS,intron-Distal,intron-Proximal4.685933.74891K562DDX55
chr193943925039439311-5'-UTR,CDS,intron-Distal,intron-Proximal4.075724.24993HepG2PPIG
chr193941203839412085-3'-UTR,CDS,intron-Distal,intron-Proximal3.283677.83839HepG2PPIG
chr193943708339437232-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.7560617.83192HepG2PPIG
chr193940941039409450-3'-UTR,CDS,intron-Distal3.601484.77136HepG2PPIG
chr193940845039408519-3'-UTR,CDS,intron-Distal,intron-Proximal5.242456.88762HepG2SF3A3
chr193940874339408753-3'-UTR,CDS,intron-Distal,intron-Proximal4.393964.08604HepG2PPIG
chr193943924939439323-5'-UTR,CDS,intron-Distal,intron-Proximal4.720076.75874HepG2PRPF4
chr193943717039437284-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.2431617.72990HepG2AQR
chr193940843639408512-3'-UTR,CDS,intron-Distal,intron-Proximal4.112936.10653K562SF3B4
chr193944045839440530-5'-UTR,CDS,intron-Distal,intron-Proximal3.8262312.06468HepG2PRPF4
chr193943564139435673-3'-UTR,CDS,intron-Distal3.523905.47500HepG2PPIG
chr193943919939439226-5'-UTR,CDS,intron-Distal,intron-Proximal4.697329.38298HepG2PRPF8
chr193943921439439232-5'-UTR,CDS,intron-Distal5.332276.38747HepG2AQR
chr193944045739440636-5'-UTR,CDS,intron-Distal,intron-Proximal3.659958.38473HepG2AQR
chr193943560839435641-3'-UTR,CDS,intron-Distal,intron-Proximal3.352736.23779HepG2PPIG
chr193943916039439214-5'-UTR,CDS,intron-Distal,intron-Proximal4.3280919.47733HepG2AQR
chr193943914439439234-5'-UTR,CDS,intron-Distal,intron-Proximal4.385188.23899K562PRPF8
chr193944031339440492-5'-UTR,CDS,intron-Distal3.508234.83318HepG2GTF2F1
chr193941275739412936-3'-UTR,CDS,intron-Distal,intron-Proximal3.020403.95292K562AQR
chr193940669239406711-CDS,intron-Distal,intron-Proximal3.499723.32039HepG2PPIG
chr193940686239406927-CDS,intron-Distal,intron-Proximal4.418089.85077HepG2PPIG
chr193941219039412250-3'-UTR,CDS,intron-Distal,intron-Proximal4.081813.36385K562UCHL5
chr193944039839440458-5'-UTR,CDS,intron-Distal4.8047812.35761HepG2PRPF4
chr193943718739437279-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.713198.76705HepG2BUD13
chr193943713039437185-3'-UTR,5'-UTR,CDS,intron-Distal3.689034.35138HepG2SRSF9
chr193941684239416883-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.150414.88012HepG2PPIG
chr193941214439412236-3'-UTR,CDS,intron-Distal,intron-Proximal3.926085.14848K562ZNF622
chr193940936839409424-3'-UTR,CDS,intron-Distal,intron-Proximal3.554255.90285HepG2PRPF8
chr193943916239439213-5'-UTR,CDS,intron-Distal,intron-Proximal4.128627.91657HepG2PPIG
chr193940902139409078-3'-UTR,CDS,intron-Distal,intron-Proximal4.2536720.10371HepG2PRPF8
chr193940625039406327-CDS,intron-Distal,intron-Proximal3.713994.77549HepG2PABPN1
chr193941680639416870-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.5260710.32587HepG2PRPF8
chr193943567339435746-3'-UTR,CDS,intron-Distal,intron-Proximal3.280505.57718HepG2PPIG
chr193943716139437288-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.1554810.15932K562AQR
chr193941286639412969-3'-UTR,CDS,intron-Distal,intron-Proximal3.185136.79180HepG2U2AF2
chr193940690539406953-CDS,intron-Distal3.798094.27313HepG2PABPN1
chr193943915639439199-intron-Distal,intron-Proximal4.5357711.87912HepG2PRPF8
chr193943257739432658-3'-UTR,intron-Distal3.583645.05725HepG2PABPN1
chr193943649039436564-3'-UTR,intron-Distal3.245944.45075HepG2HNRNPK
chr193943507339435131-intron-Distal3.209034.14144HepG2LSM11
chr193943284039432908-3'-UTR,intron-Distal,intron-Proximal4.036113.45716HepG2AKAP1
chr193941084639410961-intron-Distal,intron-Proximal4.017115.12778HepG2PCBP2
chr193943449439434538-intron-Distal3.603594.51056HepG2LSM11
chr193943189139432026-intron-Distal,intron-Proximal4.008125.90996HepG2CSTF2
chr193943456939434636-intron-Distal4.729666.36563HepG2LSM11
chr193941188539411987-intron-Distal,intron-Proximal3.246083.60573HepG2STAU2
chr193943672239436803-3'-UTR,intron-Distal3.558164.95815HepG2DROSHA
chr193943605239436161-intron-Distal3.7404912.50537HepG2XRN2
chr193943252939432569-3'-UTR,intron-Distal3.463623.66308K562UPF1
chr193941170639411794-intron-Distal3.978383.87294K562TARDBP
chr193943276239432824-3'-UTR,intron-Distal,intron-Proximal3.241583.27723HepG2AKAP1
chr193943649939436588-3'-UTR,intron-Distal4.664835.05197K562HNRNPK
chr193943273839432793-3'-UTR,intron-Distal4.406954.46422K562UPF1
chr193941280039412857-intron-Distal,intron-Proximal4.220984.12139K562DDX24
chr193943595239436003-3'-UTR,intron-Distal3.549185.47764HepG2XRN2
chr193942125939421347-CDS,intron-Distal4.091867.95933HepG2NCBP2
chr193943252139432577-3'-UTR,intron-Distal3.298093.52724HepG2PABPN1
chr193943932639439374-intron-Distal,intron-Proximal5.564206.39134HepG2SF3A3
chr193943278839432907-3'-UTR,intron-Distal,intron-Proximal3.766347.94000HepG2PABPN1
chr193943653039436568-3'-UTR,intron-Distal3.731146.64741HepG2DDX59
chr193943681339436897-3'-UTR,intron-Distal3.6568214.26607HepG2DDX59
chr193943283539432890-3'-UTR,intron-Distal,intron-Proximal4.438053.92497HepG2UPF1
chr193941086739411027-intron-Distal,intron-Proximal4.024277.73858HepG2PTBP1
chr193942129739421390-5'-UTR,CDS,intron-Distal4.930595.85529K562RBM15
chr193943614339436170-intron-Distal3.538504.48178HepG2DDX59
chr193943690939436977-3'-UTR,intron-Distal4.6182312.48637HepG2DDX59
chr193943599439436102-3'-UTR,intron-Distal4.5357016.50354HepG2DDX59
chr193944025039440366-intron-Distal3.4608011.49746HepG2PRPF4
chr193942134739421397-5'-UTR,CDS,intron-Distal3.168423.28035HepG2NCBP2
chr193942106139421144-CDS,intron-Distal4.837776.01989HepG2PRPF8
chr193943273539432817-3'-UTR,intron-Distal3.068863.63563HepG2UPF1
chr193943595739436175-3'-UTR,intron-Distal3.533279.50487HepG2HNRNPK
chr193943938139439502-intron-Distal,intron-Proximal3.445957.70093HepG2PRPF4
chr193943933839439415-intron-Distal,intron-Proximal5.065509.00594HepG2SF3B4
chr193943671339436812-3'-UTR,intron-Distal4.1401413.91130HepG2DDX59
chr193943674839436799-3'-UTR,intron-Distal3.241283.40321HepG2GRWD1
chr193943656839436633-3'-UTR,intron-Distal4.454517.30395HepG2DDX59
chr193941103939411135-intron-Distal4.841305.41525HepG2PCBP2
chr193941084439411017-intron-Distal,intron-Proximal5.856088.93487K562PTBP1
chr193943628739436352-intron-Distal,intron-Proximal4.347535.13071HepG2HNRNPK
chr193940894939409023-intron-Distal,intron-Proximal4.623634.09264K562AQR
chr193942127239421364-CDS,intron-Distal3.636164.10374K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTC-360G5.8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTC-360G5.8 is not available on ENCORE database.

  • 1 RBPs can affect the levels of CTC-360G5.8.  








The Knockdown/knockout RNA-Seq assay for CTC-360G5.8 is not available on ENCORE database.





1 RBPs can affect the gene expression of CTC-360G5.8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTC-360G5.8ENSG00000269547.112.325900.0000099999.999903.221902.48070HepG2HNRNPC
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTC-360G5.8 is not available on ENCORE database.





7 RBPs can affect the splicing of CTC-360G5.8 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECTC-360G5.8ENSG00000269547.1chr19-394087333940877939408560394086483940906139409170-0.297000.000650.00975excludedHepG2U2AF2
SECTC-360G5.8ENSG00000269547.1chr19-394087333940877939408560394086483940906139409170-0.339000.000040.00126excludedK562U2AF2
SECTC-360G5.8ENSG00000269547.1chr19-394064803940654639406043394063893940667639406769-0.072000.000100.00278excludedK562HNRNPC
A3SSCTC-360G5.8ENSG00000269547.1chr19-3940906139409214394090613940917039409405394094530.126000.000000.00000longerK562AQR
A3SSCTC-360G5.8ENSG00000269547.1chr19-3941216639412392394121663941230739412877394129070.127000.016670.08178longerK562AQR
A3SSCTC-360G5.8ENSG00000269547.1chr19-3941040139410546394104013941050739410725394107890.066000.014200.07138longerK562AQR
RICTC-360G5.8ENSG00000269547.1chr19-3941203139412236394120313941208639412166394122360.083000.008100.04662includedK562PUS1
RICTC-360G5.8ENSG00000269547.1chr19-3941203139412236394120313941208639412166394122360.117000.000580.00909includedK562UTP18
RICTC-360G5.8ENSG00000269547.1chr19-3940856039408748394085603940864839408733394087480.115000.000040.00036includedK562AQR
MXECTC-360G5.8ENSG00000269547.1chr19-39408560394086483940873339408779394083633940847339409061394091700.158000.000490.082781includedK562PUM2
MXECTC-360G5.8ENSG00000269547.1chr19-39410725394107893941203139412086394104013941050739412166394123070.245000.001000.023241includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTC-360G5.8 is not avaliable on ENCORE database.