C1orf220

General Information

Gene Name       : C1orf220
Gene ID             : ENSG00000213057.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C1orf220)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C1orf220ENSG00000213057.50.760.560.66ENCSR000AEF
HepG2C1orf220ENSG00000213057.51.411.441.42ENCSR985KAT
K562C1orf220ENSG00000213057.50.010.040.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C1orf220 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C1orf220 RNA is bound by 1 proteins.  







eCLIP assay for C1orf220 is not avaliable on ENCORE database.





1 proteins are bound to C1orf220 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1178511986178512097+5'-UTR,intron-Distal,intron-Proximal3.281535.62208HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C1orf220 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C1orf220 is not available on ENCORE database.

  • 28 RBPs can affect the levels of C1orf220.  








The Knockdown/knockout RNA-Seq assay for C1orf220 is not available on ENCORE database.





28 RBPs can affect the gene expression of C1orf220 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C1orf220ENSG00000213057.427.2414063.13800-1.212703.300802.64640HepG2ACO1
C1orf220ENSG00000213057.416.4130056.39050-1.780603.787203.17910HepG2AKAP1
C1orf220ENSG00000213057.418.4989063.24910-1.773604.887403.51640HepG2AKAP8
C1orf220ENSG00000213057.461.3370028.771501.092002.176301.37720HepG2BCLAF1
C1orf220ENSG00000213057.425.8398054.02580-1.064101.999901.45940HepG2DDX3X
C1orf220ENSG00000213057.4114.2761059.309200.946103.327302.22580HepG2DDX5
C1orf220ENSG00000213057.410.3235046.39050-2.167904.333403.57490HepG2DDX6
C1orf220ENSG00000213057.477.5473033.949901.191603.598302.48620HepG2DHX30
C1orf220ENSG00000213057.4129.6553044.615001.539006.764705.86490HepG2EIF2S1
C1orf220ENSG00000213057.4102.8044049.313901.059703.080402.40690HepG2EIF4A3
C1orf220ENSG00000213057.4148.5038096.236100.625702.294001.73790HepG2ETF1
C1orf220ENSG00000213057.488.6198037.780101.229903.892801.50210HepG2EXOSC5
C1orf220ENSG00000213057.487.6303032.941901.411404.708303.69860HepG2FUBP3
C1orf220ENSG00000213057.431.5662060.28390-0.933402.308001.41030HepG2HDGF
C1orf220ENSG00000213057.470.2824031.948401.137302.253601.60160HepG2HNRNPF
C1orf220ENSG00000213057.4116.0525039.267201.563302.396101.82880HepG2HNRNPU
C1orf220ENSG00000213057.462.9986031.459001.001702.185301.53770HepG2IGF2BP1
C1orf220ENSG00000213057.4102.6561049.745501.045103.247502.53760HepG2MAGOH
C1orf220ENSG00000213057.464.3650025.116401.357503.078502.23110HepG2PRPF8
C1orf220ENSG00000213057.437.4941070.04990-0.901702.279301.66880HepG2PUM2
C1orf220ENSG00000213057.445.0612080.43490-0.835902.053001.58880HepG2RBM22
C1orf220ENSG00000213057.416.5680038.31010-1.209301.858901.34560HepG2RPS19
C1orf220ENSG00000213057.461.76780103.38950-0.743202.088301.50140HepG2SF3A3
C1orf220ENSG00000213057.476.6860039.497300.957102.197101.56340HepG2SF3B1
C1orf220ENSG00000213057.420.0291052.95160-1.402603.322002.26190HepG2SMNDC1
C1orf220ENSG00000213057.496.8699031.392001.625606.733205.72560HepG2SRSF7
C1orf220ENSG00000213057.443.6619074.15310-0.764101.975401.43280HepG2SUCLG1
C1orf220ENSG00000213057.49.560100.0000099999.999902.586101.80280K562MTPAP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C1orf220 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C1orf220 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C1orf220 is not avaliable on ENCORE database.