C1orf220

General Information

Gene Name : C1orf220
Gene ID : ENSG00000213057.5
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C1orf220)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C1orf220	ENSG00000213057.5	0.76	0.56	0.66	ENCSR000AEF
HepG2	C1orf220	ENSG00000213057.5	1.41	1.44	1.42	ENCSR985KAT
K562	C1orf220	ENSG00000213057.5	0.01	0.04	0.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C1orf220 is not avaliable on ENCORE database.

Proteins bound to RNA

C1orf220 RNA is bound by 1 proteins.

CanvasJS.com

eCLIP assay for C1orf220 is not avaliable on ENCORE database.

1 proteins are bound to C1orf220 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	178511986	178512097	+	5'-UTR,intron-Distal,intron-Proximal	3.28153	5.62208	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 1 of 1 entries

eCLIP assay for C1orf220 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for C1orf220 is not available on ENCORE database.
28 RBPs can affect the levels of C1orf220.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for C1orf220 is not available on ENCORE database.

28 RBPs can affect the gene expression of C1orf220 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C1orf220	ENSG00000213057.4	129.65530	44.61500	1.53900	6.76470	5.86490	HepG2	EIF2S1
C1orf220	ENSG00000213057.4	96.86990	31.39200	1.62560	6.73320	5.72560	HepG2	SRSF7
C1orf220	ENSG00000213057.4	87.63030	32.94190	1.41140	4.70830	3.69860	HepG2	FUBP3
C1orf220	ENSG00000213057.4	10.32350	46.39050	-2.16790	4.33340	3.57490	HepG2	DDX6
C1orf220	ENSG00000213057.4	18.49890	63.24910	-1.77360	4.88740	3.51640	HepG2	AKAP8
C1orf220	ENSG00000213057.4	16.41300	56.39050	-1.78060	3.78720	3.17910	HepG2	AKAP1
C1orf220	ENSG00000213057.4	27.24140	63.13800	-1.21270	3.30080	2.64640	HepG2	ACO1
C1orf220	ENSG00000213057.4	102.65610	49.74550	1.04510	3.24750	2.53760	HepG2	MAGOH
C1orf220	ENSG00000213057.4	77.54730	33.94990	1.19160	3.59830	2.48620	HepG2	DHX30
C1orf220	ENSG00000213057.4	102.80440	49.31390	1.05970	3.08040	2.40690	HepG2	EIF4A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 28 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C1orf220

General Information

Functions

Localization

Domains (AlphaFold: C1orf220)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C1orf220 is not avaliable on ENCORE database.

1 proteins are bound to C1orf220 RNA:

eCLIP assay for C1orf220 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C1orf220 is not available on ENCORE database.

28 RBPs can affect the gene expression of C1orf220 :

The Knockdown/knockout RNA-Seq assay for C1orf220 is not available on ENCORE database.

No RBPs affect the alternative splcing events of C1orf220 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for C1orf220 is not avaliable on ENCORE database.