C12orf73

General Information

Gene Name       : C12orf73
Gene ID             : ENSG00000204954.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C12orf73)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C12orf73ENSG00000204954.96.1412.599.37ENCSR000AEF
HepG2C12orf73ENSG00000204954.921.3017.9419.62ENCSR985KAT
K562C12orf73ENSG00000204954.923.4525.4224.44ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C12orf73 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C12orf73 RNA is bound by 7 proteins.  







eCLIP assay for C12orf73 is not avaliable on ENCORE database.





7 proteins are bound to C12orf73 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12104347282104347350-3'-UTR,CDS,intron-Distal,intron-Proximal4.172065.97994K562AQR
chr12104350492104350594-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.457163.91614K562BUD13
chr12104350356104350390-3'-UTR,CDS,intron-Distal,intron-Proximal5.085046.22530K562AQR
chr12104350432104350562-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.455576.22359HepG2BUD13
chr12104344987104345086-3'-UTR,intron-Distal,intron-Proximal4.344265.44709K562KHSRP
chr12104345319104345412-3'-UTR,CDS,intron-Distal,intron-Proximal3.302113.31745K562ZNF622
chr12104345227104345278-3'-UTR,intron-Distal,intron-Proximal4.2537812.87873K562PABPC4
chr12104345086104345304-3'-UTR,intron-Distal,intron-Proximal3.8922510.06143K562KHSRP
chr12104350848104350960-5'-UTR,intron-Distal,intron-Proximal3.228124.84203K562DDX3X
chr12104350390104350412-CDS,intron-Distal,intron-Proximal4.853345.17615K562AQR
chr12104358939104359067-intron-Distal4.9250714.28056HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C12orf73 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C12orf73 is not available on ENCORE database.

  • 31 RBPs can affect the levels of C12orf73.  








The Knockdown/knockout RNA-Seq assay for C12orf73 is not available on ENCORE database.





31 RBPs can affect the gene expression of C12orf73 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C12orf73ENSG00000204954.5292.30210185.440500.656403.578202.90700HepG2BOP1
C12orf73ENSG00000204954.5181.60830276.06900-0.604202.497701.57870HepG2CCAR1
C12orf73ENSG00000204954.5213.05330330.76610-0.634603.177702.49330HepG2EIF4A3
C12orf73ENSG00000204954.5198.96770321.98320-0.694503.028502.31150HepG2EIF4B
C12orf73ENSG00000204954.5228.70750333.62760-0.544702.640901.96500HepG2FXR1
C12orf73ENSG00000204954.5222.98840309.54190-0.473202.016801.44530HepG2G3BP1
C12orf73ENSG00000204954.5102.09290184.16180-0.851103.601102.89290HepG2HNRNPLL
C12orf73ENSG00000204954.5216.89580314.66160-0.536802.505501.85960HepG2IGF2BP2
C12orf73ENSG00000204954.5139.38720243.75030-0.806303.663802.21900HepG2KRR1
C12orf73ENSG00000204954.5244.18080333.74360-0.450801.915901.36440HepG2MAGOH
C12orf73ENSG00000204954.5207.01240335.62800-0.697103.552602.84550HepG2MATR3
C12orf73ENSG00000204954.5211.90180282.72750-0.416002.061101.40030HepG2NOL12
C12orf73ENSG00000204954.5234.58190318.48890-0.441202.428201.90990HepG2PTBP1
C12orf73ENSG00000204954.5208.55120286.28100-0.457002.238401.63220HepG2PUM2
C12orf73ENSG00000204954.5198.27400313.05600-0.658904.071103.26710HepG2RBM25
C12orf73ENSG00000204954.5238.23180354.45390-0.573203.787503.17350HepG2NELFE
C12orf73ENSG00000204954.5247.62940330.11410-0.414802.251601.68900HepG2RECQL
C12orf73ENSG00000204954.5203.10810281.57810-0.471302.732502.18340HepG2SRSF9
C12orf73ENSG00000204954.5100.65500216.79400-1.106908.246007.14640HepG2UPF1
C12orf73ENSG00000204954.5689.62380533.751500.369503.228502.53290K562DDX47
C12orf73ENSG00000204954.5292.67990388.95790-0.410302.514301.82290K562EIF2S2
C12orf73ENSG00000204954.5716.89850518.320300.467803.522402.67220K562GRSF1
C12orf73ENSG00000204954.5391.48000246.185200.669103.998102.86470K562HNRNPM
C12orf73ENSG00000204954.5545.72290405.780400.427402.564401.79540K562HSPD1
C12orf73ENSG00000204954.5452.14970339.774300.412102.282801.53820K562PPIG
C12orf73ENSG00000204954.5377.76150242.301200.640603.807602.92930K562PRPF8
C12orf73ENSG00000204954.5630.13080456.212700.465802.949502.39240K562PUS1
C12orf73ENSG00000204954.5410.34610246.833100.733204.767803.69290K562RPS19
C12orf73ENSG00000204954.5388.18260493.67170-0.346802.489101.59580K562SRPK2
C12orf73ENSG00000204954.5496.87990330.153700.589704.588103.68120K562SRSF1
C12orf73ENSG00000204954.5188.13300406.34770-1.111005.501703.21090K562STIP1
C12orf73ENSG00000204954.5417.16190517.83480-0.311902.147501.50840K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C12orf73 is not available on ENCORE database.





23 RBPs can affect the splicing of C12orf73 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.243000.000000.00006includedHepG2G3BP1
SEC12orf73ENSG00000204954.5chr12-104347191104347312104345361104345408104350408104350925-0.093000.000070.00382excludedK562AKAP8L
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.128000.000270.06809includedK562WDR43
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.259000.000000.00001includedHepG2AKAP1
SEC12orf73ENSG00000204954.5chr12-104347191104347312104345361104345408104350408104350925-0.065000.003050.03105excludedK562AQR
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.083000.000830.03364includedK562FXR1
SEC12orf73ENSG00000204954.5chr12-104347191104347312104345361104345408104350408104350925-0.076000.001900.02885excludedK562PUS1
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.183000.000090.00920includedHepG2NCBP2
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.302000.000000.00001includedHepG2MATR3
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.089000.001440.03014includedK562U2AF1
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.144000.002940.05916includedHepG2SRSF1
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.283000.000000.00003includedHepG2IGF2BP3
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.278000.000010.00154includedHepG2TIAL1
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.134000.000010.01433includedK562TBRG4
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.283000.000000.00001includedHepG2PCBP1
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.192000.000330.07826includedHepG2NOL12
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.136000.000170.03443includedK562UPF1
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.116000.000060.00195includedK562U2AF2
SEC12orf73ENSG00000204954.5chr12-104347191104347312104343979104345408104350408104350526-0.085000.001100.02945excludedK562RBM15
SEC12orf73ENSG00000204954.5chr12-1043471911043473121043439791043454081043504081043505260.238000.000000.00038includedHepG2KHSRP
SEC12orf73ENSG00000204954.5chr12-1043486521043487461043471911043473121043504081043505260.536000.000040.00127includedK562HNRNPC
A3SSC12orf73ENSG00000204954.5chr12-1043452571043454411043452571043454081043471911043473120.207000.000370.00287longerK562AQR
MXEC12orf73ENSG00000204954.5chr12-104347191104347312104348652104348746104345187104345408104350408104350526-0.092000.010760.083712includedHepG2SFPQ
MXEC12orf73ENSG00000204954.5chr12-104347191104347312104348652104348746104345187104345408104350408104350526-0.110000.002840.042672includedHepG2HNRNPUL1
MXEC12orf73ENSG00000204954.5chr12-1043471911043473121043486521043487461043451871043454081043504081043505260.422000.000090.002811includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C12orf73 is not avaliable on ENCORE database.