ATL3

General Information

Gene Name       : ATL3
Gene ID             : ENSG00000184743.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ATL3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATL3ENSG00000184743.1212.0110.3811.20ENCSR000AEF
HepG2ATL3ENSG00000184743.120.060.030.04ENCSR985KAT
K562ATL3ENSG00000184743.1217.5316.0516.79ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATL3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATL3 RNA is bound by 15 proteins.  







eCLIP assay for ATL3 is not avaliable on ENCORE database.





15 proteins are bound to ATL3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116339626563396306-3'-UTR,intron-Distal3.239893.06830K562UPF1
chr116339649463396626-3'-UTR,intron-Distal,intron-Proximal4.7108613.53656K562CSTF2T
chr116339668863396755-3'-UTR,intron-Distal,intron-Proximal3.954833.28989K562RBM15
chr116339464663394706-3'-UTR,intron-Distal4.9364711.82794K562PUM2
chr116339174163391789-3'-UTR,intron-Distal4.108795.38549K562PUM2
chr116339470363394774-3'-UTR,intron-Distal3.599625.56979K562YBX3
chr116339239763392494-3'-UTR,intron-Distal3.191906.07920K562FAM120A
chr116340300563403050-CDS,intron-Distal,intron-Proximal5.011559.12048K562YBX3
chr116339877463398868-CDS,intron-Distal5.136116.19943K562RBM15
chr116339876963398873-CDS,intron-Distal3.207108.82209K562UCHL5
chr116340376963403832-CDS,intron-Distal,intron-Proximal3.107243.41438K562BUD13
chr116342654463426642-CDS,intron-Distal,intron-Proximal4.278704.78556K562LIN28B
chr116339878363398882-CDS,intron-Distal3.033166.62050K562ZNF622
chr116340362663403680-CDS,intron-Distal,intron-Proximal4.591628.52787K562AQR
chr116340053863400570-CDS,intron-Distal,intron-Proximal4.275425.20509K562YBX3
chr116341163763411695-CDS,intron-Distal,intron-Proximal3.872203.18234K562BUD13
chr116340043963400524-CDS,intron-Distal,intron-Proximal3.533164.77019K562BUD13
chr116340377863403877-CDS,intron-Distal,intron-Proximal4.937684.40745K562SF3B4
chr116341159063411660-CDS,intron-Distal,intron-Proximal3.127143.18246K562PRPF8
chr116341994263420050-CDS,intron-Distal,intron-Proximal5.189484.48364K562DDX24
chr116340368663403795-CDS,intron-Distal3.417805.11155K562YBX3
chr116340360863403681-CDS,intron-Distal,intron-Proximal5.245668.34848K562PRPF8
chr116340044863400505-CDS,intron-Distal,intron-Proximal5.585049.63974K562AQR
chr116339870463398821-CDS,intron-Distal5.1320510.68995K562GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATL3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATL3 is not available on ENCORE database.

  • 22 RBPs can affect the levels of ATL3.  








The Knockdown/knockout RNA-Seq assay for ATL3 is not available on ENCORE database.





22 RBPs can affect the gene expression of ATL3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATL3ENSG00000184743.812.682900.460304.784102.974102.35940HepG2EIF2S1
ATL3ENSG00000184743.82179.060001600.441700.445104.420302.84810K562ABCF1
ATL3ENSG00000184743.82135.548401763.151200.276401.928301.42200K562AQR
ATL3ENSG00000184743.8998.95150729.729800.453003.429902.45980K562BOP1
ATL3ENSG00000184743.82162.934201592.888500.441205.840604.09430K562CCDC124
ATL3ENSG00000184743.81139.92760775.905500.554906.538405.32950K562CPSF6
ATL3ENSG00000184743.82843.846202194.809600.373604.293603.06920K562CELF1
ATL3ENSG00000184743.8721.88400957.64470-0.407704.239302.51580K562DDX6
ATL3ENSG00000184743.8716.10560888.68310-0.311502.587601.48360K562EIF4B
ATL3ENSG00000184743.81043.62210789.478300.402502.989002.09860K562FMR1
ATL3ENSG00000184743.81301.458001026.248800.342603.776203.08600K562FXR1
ATL3ENSG00000184743.8439.24570724.24780-0.721507.506806.56920K562HNRNPC
ATL3ENSG00000184743.8963.057301331.21100-0.467003.268501.79360K562PCBP1
ATL3ENSG00000184743.81236.00000864.024800.516404.944603.94410K562PRPF8
ATL3ENSG00000184743.83442.055701947.223400.8218014.9303013.01040K562PUF60
ATL3ENSG00000184743.81929.650601375.468900.488304.797104.10740K562PUS1
ATL3ENSG00000184743.8848.182201335.75950-0.655204.947303.43740K562NELFE
ATL3ENSG00000184743.81790.275901380.601100.374802.861301.58460K562STAU1
ATL3ENSG00000184743.81154.99930953.739000.276102.151401.42650K562SYNCRIP
ATL3ENSG00000184743.8928.636301266.63000-0.447802.979402.12560K562TIA1
ATL3ENSG00000184743.81358.53600969.784200.486203.648702.35570K562U2AF1
ATL3ENSG00000184743.81376.443501001.449100.458805.489804.36190K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATL3 is not available on ENCORE database.





3 RBPs can affect the splicing of ATL3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATL3ENSG00000184743.8chr11-6340331863403465634030056340306263403678634038060.157000.000000.00000includedK562AQR
SEATL3ENSG00000184743.8chr11-634139786341403563411640634117336341940763419458-0.081000.007100.06187excludedK562AQR
SEATL3ENSG00000184743.8chr11-634030056340306263400497634005696340367863403881-0.064000.000640.00839excludedK562AQR
SEATL3ENSG00000184743.8chr11-634033186340346563403005634030626340367863403806-0.081000.000200.01078excludedK562FXR1
SEATL3ENSG00000184743.8chr11-634033186340346563403005634030626340367863403806-0.262000.000000.00015excludedK562FXR2
A3SSATL3ENSG00000184743.8chr11-6341994263420083634199426342004763426232634264040.066000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATL3 is not avaliable on ENCORE database.