USP15

General Information

Gene Name : USP15
Gene ID : ENSG00000135655.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: USP15)

Not Available

Antibody Validation

Cell Signaling Technology: 66310S

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	USP15	ENSG00000135655.15	72.99	59.31	66.15	ENCSR000AEF
HepG2	USP15	ENSG00000135655.15	17.66	23.45	20.55	ENCSR985KAT
K562	USP15	ENSG00000135655.15	109.57	119.33	114.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
USP15		66310S	1			Submitted, ENCORE2	BGHcLV43-59, Submitted, ENCORE2	BGKcLV42-99, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
USP15	K562	CRISPR			USP15-BGKcLV42-99,USP15-BGKcLV42-100	NT-BGKcLV42-1,NT-BGKcLV42-2	90.5,91.8	Submitting	ENCORE2
USP15	HepG2	CRISPR			USP15-BGHcLV43-59,USP15-BGHcLV43-60	NT-BGHcLV43-1,NT-BGHcLV43-2	84.3,88.4	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
USP15	Product_ID: 66310S Lot_ID: 1 Source: Cell Signaling Technology Target Name: USP15-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for USP15 is not avaliable on ENCORE database.

Proteins bound to RNA

USP15 RNA is bound by 38 proteins.

CanvasJS.com

eCLIP assay for USP15 is not avaliable on ENCORE database.

38 proteins are bound to USP15 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	62682835	62682905	+	intron-Distal	6.11950	31.68398	K562	EXOSC5
chr12	62740835	62740899	+	intron-Distal	5.63493	31.22187	K562	KHSRP
chr12	62778802	62778923	+	intron-Distal	5.67352	29.58246	K562	QKI
chr12	62777814	62777894	+	CDS,intron-Proximal	4.07542	27.75893	K562	SF3B4
chr12	62732704	62732756	+	intron-Distal	5.85608	27.35239	K562	EXOSC5
chr12	62682139	62682190	+	intron-Distal	6.01845	27.02343	K562	EXOSC5
chr12	62683488	62683544	+	intron-Distal	5.73646	26.68744	K562	EXOSC5
chr12	62682372	62682472	+	intron-Distal	6.73774	24.70740	K562	EXOSC5
chr12	62682905	62682990	+	intron-Distal	6.53647	24.03439	K562	EXOSC5
chr12	62715485	62715559	+	intron-Distal,intron-Proximal	4.85786	22.68271	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 274 entries

eCLIP assay for USP15 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for USP15 is not available on ENCORE database.
90 RBPs can affect the levels of USP15.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for USP15 is not available on ENCORE database.

90 RBPs can affect the gene expression of USP15 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
USP15	ENSG00000135655.9	1440.45500	690.50720	1.06070	29.93320	28.74410	HepG2	SRSF1
USP15	ENSG00000135655.9	8095.66470	5542.26170	0.54660	21.69300	19.66980	K562	WDR43
USP15	ENSG00000135655.9	11868.43730	6987.10930	0.76430	14.83700	13.61990	K562	PUS1
USP15	ENSG00000135655.9	2250.43550	3830.95650	-0.76750	15.58620	12.87410	K562	HNRNPF
USP15	ENSG00000135655.9	3431.61140	5362.82970	-0.64410	13.03890	11.65470	K562	PTBP1
USP15	ENSG00000135655.9	3246.09380	4672.96960	-0.52560	12.67630	11.47620	K562	FXR1
USP15	ENSG00000135655.9	11226.20350	8341.58360	0.42840	11.72530	10.48440	K562	DDX47
USP15	ENSG00000135655.9	4009.89220	5755.10320	-0.52130	11.53270	9.73230	K562	HNRNPU
USP15	ENSG00000135655.9	9455.83600	6808.14410	0.47380	10.68400	9.54330	K562	RBM15
USP15	ENSG00000135655.9	7409.89530	5085.38920	0.54300	10.88950	9.28700	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 103 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for USP15 is not available on ENCORE database.

31 RBPs can affect the splicing of USP15 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	USP15	ENSG00000135655.9	chr12	+	62768170	62768316	62749208	62749256	62775270	62775444	-0.10500	0.00000	excluded	K562	SRSF1
SE	USP15	ENSG00000135655.9	chr12	+	62783384	62783479	62783210	62783294	62783576	62783768	-0.14400	0.00000	excluded	K562	SF3B4
SE	USP15	ENSG00000135655.9	chr12	+	62699700	62699839	62696570	62696701	62708570	62708697	-0.06200	0.00000	excluded	K562	AKAP8L
SE	USP15	ENSG00000135655.9	chr12	+	62783384	62783479	62783210	62783294	62783576	62783768	-0.19700	0.00000	excluded	K562	AQR
SE	USP15	ENSG00000135655.9	chr12	+	62790074	62790178	62786832	62786982	62794966	62795055	-0.09400	0.00000	excluded	K562	AQR
SE	USP15	ENSG00000135655.9	chr12	+	62768170	62768316	62749208	62749256	62775270	62775444	-0.13300	0.00000	excluded	K562	FXR1
SE	USP15	ENSG00000135655.9	chr12	+	62699700	62699839	62696570	62696701	62708570	62708697	-0.07600	0.00000	excluded	K562	PUS1
SE	USP15	ENSG00000135655.9	chr12	+	62699700	62699839	62696570	62696701	62708570	62708697	-0.05700	0.00000	excluded	K562	UTP18
SE	USP15	ENSG00000135655.9	chr12	+	62743001	62743088	62719652	62719714	62749111	62749256	-0.22300	0.00001	excluded	K562	U2AF2
SE	USP15	ENSG00000135655.9	chr12	+	62783384	62783479	62783210	62783294	62783576	62783768	-0.05500	0.00021	excluded	K562	U2AF2

Showing 1 to 10 of 83 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

USP15

General Information

Functions

Localization

Domains (AlphaFold: USP15)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for USP15 is not avaliable on ENCORE database.

38 proteins are bound to USP15 RNA:

eCLIP assay for USP15 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for USP15 is not available on ENCORE database.

90 RBPs can affect the gene expression of USP15 :

The Knockdown/knockout RNA-Seq assay for USP15 is not available on ENCORE database.

31 RBPs can affect the splicing of USP15 :

The Knockdown/knockout RNA-Seq assay for USP15 is not avaliable on ENCORE database.