UPF3A

General Information

Gene Name : UPF3A
Gene ID : ENSG00000169062.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UPF3A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UPF3A	ENSG00000169062.14	42.23	41.84	42.03	ENCSR000AEF
HepG2	UPF3A	ENSG00000169062.14	53.82	59.40	56.61	ENCSR985KAT
K562	UPF3A	ENSG00000169062.14	40.56	43.61	42.09	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UPF3A is not avaliable on ENCORE database.

Proteins bound to RNA

UPF3A RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for UPF3A is not avaliable on ENCORE database.

18 proteins are bound to UPF3A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	115047581	115047646	+	CDS,intron-Distal,intron-Proximal	3.89454	28.61759	HepG2	PRPF8
chr13	115057392	115057487	+	intron-Distal	5.69530	16.93929	HepG2	U2AF2
chr13	115048255	115048329	+	CDS,intron-Proximal	4.23016	9.62011	K562	SF3B4
chr13	115047582	115047673	+	CDS,intron-Distal,intron-Proximal	3.88772	8.97789	HepG2	EFTUD2
chr13	115052073	115052135	+	CDS,intron-Distal,intron-Proximal	4.11193	7.26133	HepG2	PRPF8
chr13	115064397	115064475	+	CDS,intron-Distal	5.29951	6.96356	K562	UCHL5
chr13	115052167	115052224	+	intron-Distal,intron-Proximal	3.94217	5.99968	K562	PRPF8
chr13	115067258	115067324	+	CDS	3.37295	5.91739	K562	UCHL5
chr13	115070360	115070410	+	3'-UTR,CDS	4.64436	5.44793	K562	ZNF622
chr13	115070373	115070436	+	3'-UTR,CDS	3.69301	4.76274	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 31 entries

eCLIP assay for UPF3A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UPF3A is not available on ENCORE database.
68 RBPs can affect the levels of UPF3A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for UPF3A is not available on ENCORE database.

68 RBPs can affect the gene expression of UPF3A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UPF3A	ENSG00000169062.10	727.17020	1599.42150	-1.13720	24.75630	23.21510	HepG2	PUF60
UPF3A	ENSG00000169062.10	1041.83960	1803.46770	-0.79160	20.76570	19.19980	HepG2	AUH
UPF3A	ENSG00000169062.10	864.84260	1783.20640	-1.04400	19.13570	17.54550	HepG2	TARDBP
UPF3A	ENSG00000169062.10	768.34110	1653.82250	-1.10600	15.89650	13.87970	HepG2	UBE2L3
UPF3A	ENSG00000169062.10	888.35070	2014.87580	-1.18150	13.12630	11.43850	HepG2	SNRNP70
UPF3A	ENSG00000169062.10	424.00920	766.78150	-0.85470	11.93960	10.25200	K562	U2AF2
UPF3A	ENSG00000169062.10	594.00870	911.14590	-0.61720	9.71740	8.63710	HepG2	HNRNPU
UPF3A	ENSG00000169062.10	812.96380	1173.92350	-0.53010	9.57970	8.48930	HepG2	CKAP4
UPF3A	ENSG00000169062.10	1247.22720	1689.75710	-0.43810	8.85870	7.64920	HepG2	DAZAP1
UPF3A	ENSG00000169062.10	844.74770	1308.16890	-0.63100	8.43040	7.32970	HepG2	SRSF7
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 77 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UPF3A is not available on ENCORE database.

57 RBPs can affect the splicing of UPF3A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	UPF3A	ENSG00000169062.10	chr13	+	115064314	115064475	115057108	115057267	115067205	115067454	-0.49200	0.00000	excluded	K562	SRSF1
SE	UPF3A	ENSG00000169062.10	chr13	+	115051776	115051875	115048311	115048418	115051993	115052104	-0.32100	0.00010	excluded	K562	PRPF8
SE	UPF3A	ENSG00000169062.10	chr13	+	115064314	115064475	115057108	115057267	115067205	115067454	-0.31600	0.00000	excluded	K562	PRPF8
SE	UPF3A	ENSG00000169062.10	chr13	+	115051776	115051875	115048311	115048418	115051993	115052104	-0.47700	0.00000	excluded	HepG2	RBM22
SE	UPF3A	ENSG00000169062.10	chr13	+	115064314	115064475	115057108	115057267	115067205	115067500	-0.07500	0.00075	excluded	HepG2	DDX59
SE	UPF3A	ENSG00000169062.10	chr13	+	115064323	115064475	115057108	115057267	115067205	115067500	-0.08300	0.00006	excluded	HepG2	U2AF2
SE	UPF3A	ENSG00000169062.10	chr13	+	115051776	115051875	115048311	115048418	115051993	115052104	-0.29900	0.00000	excluded	HepG2	U2AF2
SE	UPF3A	ENSG00000169062.10	chr13	+	115056963	115057019	115051993	115052104	115057108	115057255	-0.11000	0.00000	excluded	HepG2	U2AF2
SE	UPF3A	ENSG00000169062.10	chr13	+	115051776	115051875	115048311	115048418	115051993	115052104	-0.17500	0.00268	excluded	K562	APOBEC3C
SE	UPF3A	ENSG00000169062.10	chr13	+	115064314	115064475	115057108	115057267	115067205	115067500	-0.22200	0.00001	excluded	K562	EFTUD2

Showing 1 to 10 of 151 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UPF3A

General Information

Functions

Localization

Domains (AlphaFold: UPF3A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UPF3A is not avaliable on ENCORE database.

18 proteins are bound to UPF3A RNA:

eCLIP assay for UPF3A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UPF3A is not available on ENCORE database.

68 RBPs can affect the gene expression of UPF3A :

The Knockdown/knockout RNA-Seq assay for UPF3A is not available on ENCORE database.

57 RBPs can affect the splicing of UPF3A :

The Knockdown/knockout RNA-Seq assay for UPF3A is not avaliable on ENCORE database.