UBR7

General Information

Gene Name : UBR7
Gene ID : ENSG00000012963.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UBR7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UBR7	ENSG00000012963.14	37.23	32.18	34.70	ENCSR000AEF
HepG2	UBR7	ENSG00000012963.14	16.06	21.07	18.56	ENCSR985KAT
K562	UBR7	ENSG00000012963.14	28.21	29.48	28.84	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	UBR7-BGRSLV04-RS293		UBR7	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
UBR7	Ribo-STAMP-293T	shRNA			UBR7-BGRSLV04-61,UBR7-BGRSLV04-62	NT-BGRSLV04-1,NT-BGRSLV04-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UBR7 is not avaliable on ENCORE database.

Proteins bound to RNA

UBR7 RNA is bound by 6 proteins.

CanvasJS.com

eCLIP assay for UBR7 is not avaliable on ENCORE database.

6 proteins are bound to UBR7 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	93694341	93694485	+	3'-UTR	4.18302	32.07157	K562	FAM120A
chr14	93694338	93694462	+	3'-UTR	4.81063	26.40795	K562	UPF1
chr14	93694730	93694827	+	3'-UTR	5.48802	16.57890	K562	PUM2
chr14	93694150	93694227	+	3'-UTR	5.41671	15.14095	K562	FAM120A
chr14	93694069	93694146	+	3'-UTR	5.74642	11.97438	K562	UPF1
chr14	93695162	93695217	+	3'-UTR	5.70308	11.48502	K562	FAM120A
chr14	93694146	93694207	+	3'-UTR	5.62266	10.90122	K562	UPF1
chr14	93693796	93693879	+	3'-UTR	4.18553	10.26427	K562	FAM120A
chr14	93693890	93693970	+	3'-UTR	4.56470	10.12270	K562	FAM120A
chr14	93673679	93673741	+	5'-UTR,CDS,intron-Distal	4.11557	9.77030	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 19 entries

eCLIP assay for UBR7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UBR7 is not available on ENCORE database.
102 RBPs can affect the levels of UBR7.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for UBR7 is not available on ENCORE database.

102 RBPs can affect the gene expression of UBR7 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UBR7	ENSG00000012963.9	353.39090	709.39220	-1.00530	20.35000	19.20430	HepG2	ZNF622
UBR7	ENSG00000012963.9	182.25280	642.88560	-1.81860	20.96140	19.18990	HepG2	EIF4B
UBR7	ENSG00000012963.9	761.82340	1454.90240	-0.93340	21.07430	19.14590	K562	MTPAP
UBR7	ENSG00000012963.9	224.57650	688.93030	-1.61720	20.44110	18.90580	HepG2	SUPV3L1
UBR7	ENSG00000012963.9	502.53950	943.21260	-0.90830	18.18440	17.19920	HepG2	SRFBP1
UBR7	ENSG00000012963.9	423.02330	835.09860	-0.98120	16.34740	15.29980	HepG2	RBM22
UBR7	ENSG00000012963.9	254.92210	633.80240	-1.31400	16.29760	14.94560	HepG2	HNRNPLL
UBR7	ENSG00000012963.9	289.12160	638.18790	-1.14230	14.44770	13.23080	HepG2	BOP1
UBR7	ENSG00000012963.9	1238.04950	2150.87130	-0.79690	14.26370	12.51860	K562	GRSF1
UBR7	ENSG00000012963.9	592.56360	1073.89070	-0.85780	10.53730	8.78110	K562	BOP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UBR7 is not available on ENCORE database.

8 RBPs can affect the splicing of UBR7 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	UBR7	ENSG00000012963.9	chr14	+	93685557	93685707			93684872	93685081	93686594	93686768	-0.28900	0.00000	0.00000	excluded	K562	U2AF1
SE	UBR7	ENSG00000012963.9	chr14	+	93685557	93685707			93684872	93685081	93686594	93686757	-0.40900	0.00000	0.00000	excluded	K562	U2AF2
MXE	UBR7	ENSG00000012963.9	chr14	+	93676993	93677054	93678377	93678473	93673587	93673786	93681274	93681328	0.42900	0.00000	0.00000	1included	K562	AQR
MXE	UBR7	ENSG00000012963.9	chr14	+	93686594	93686757	93688658	93688720	93685026	93685081	93693288	93693571	0.27000	0.00000	0.00002	1included	K562	U2AF2
SE	UBR7	ENSG00000012963.9	chr14	+	93685557	93685707			93684872	93685081	93686594	93686757	-0.16400	0.00006	0.00501	excluded	K562	HNRNPK
SE	UBR7	ENSG00000012963.9	chr14	+	93685557	93685707			93684872	93685081	93686594	93686768	-0.18800	0.00029	0.00752	excluded	K562	SF3B4
SE	UBR7	ENSG00000012963.9	chr14	+	93685557	93685707			93684872	93685081	93686594	93686757	-0.12900	0.00042	0.01394	excluded	K562	RBM15
SE	UBR7	ENSG00000012963.9	chr14	+	93685557	93685707			93684872	93685081	93686594	93686757	-0.13700	0.00054	0.01681	excluded	K562	AGGF1
SE	UBR7	ENSG00000012963.9	chr14	+	93676169	93676303			93673585	93673786	93676993	93677054	-0.06900	0.00064	0.00839	excluded	K562	AQR
SE	UBR7	ENSG00000012963.9	chr14	+	93685557	93685707			93684872	93685081	93686594	93686768	-0.10700	0.00205	0.03067	excluded	K562	PUS1

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UBR7

General Information

Functions

Localization

Domains (AlphaFold: UBR7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UBR7 is not avaliable on ENCORE database.

6 proteins are bound to UBR7 RNA:

eCLIP assay for UBR7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UBR7 is not available on ENCORE database.

102 RBPs can affect the gene expression of UBR7 :

The Knockdown/knockout RNA-Seq assay for UBR7 is not available on ENCORE database.

8 RBPs can affect the splicing of UBR7 :

The Knockdown/knockout RNA-Seq assay for UBR7 is not avaliable on ENCORE database.