TNFRSF19

General Information

Gene Name : TNFRSF19
Gene ID : ENSG00000127863.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TNFRSF19)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TNFRSF19	ENSG00000127863.15	32.91	29.47	31.19	ENCSR000AEF
HepG2	TNFRSF19	ENSG00000127863.15	64.50	84.50	74.50	ENCSR985KAT
K562	TNFRSF19	ENSG00000127863.15	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TNFRSF19 is not avaliable on ENCORE database.

Proteins bound to RNA

TNFRSF19 RNA is bound by 27 proteins.

CanvasJS.com

eCLIP assay for TNFRSF19 is not avaliable on ENCORE database.

27 proteins are bound to TNFRSF19 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	24234607	24234629	+	CDS	5.07276	24.01824	HepG2	SND1
chr13	24242117	24242144	+	CDS,intron-Proximal	5.31933	20.34840	HepG2	SND1
chr13	24200870	24200918	+	3'-UTR,CDS	4.85815	20.12489	HepG2	SND1
chr13	24233206	24233262	+	CDS	3.60910	18.20409	HepG2	SND1
chr13	24242144	24242203	+	CDS	4.67898	17.65045	HepG2	SND1
chr13	24190005	24190145	+	5'-UTR,CDS,intron-Proximal	4.05271	17.64180	HepG2	RPS3
chr13	24153593	24153670	+	5'-UTR,intron-Distal,intron-Proximal	3.87614	17.35766	HepG2	DDX3X
chr13	24243210	24243278	+	3'-UTR,CDS,intron-Proximal	3.34194	16.75721	HepG2	PRPF8
chr13	24233188	24233206	+	CDS,intron-Proximal	4.36326	16.34553	HepG2	SND1
chr13	24200918	24200932	+	CDS,intron-Proximal	4.35613	15.99615	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 73 entries

eCLIP assay for TNFRSF19 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TNFRSF19 is not available on ENCORE database.
123 RBPs can affect the levels of TNFRSF19.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TNFRSF19 is not available on ENCORE database.

123 RBPs can affect the gene expression of TNFRSF19 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TNFRSF19	ENSG00000127863.11	1191.66260	4728.91310	-1.98850	210.29150	206.38310	HepG2	DAZAP1
TNFRSF19	ENSG00000127863.11	5546.11130	1720.00570	1.68900	142.84010	140.78590	HepG2	SRSF1
TNFRSF19	ENSG00000127863.11	5411.95610	1761.47660	1.61930	117.18330	115.04850	HepG2	NELFE
TNFRSF19	ENSG00000127863.11	224.13620	1689.94070	-2.91450	107.42380	105.00570	HepG2	BOP1
TNFRSF19	ENSG00000127863.11	1004.29600	3137.34560	-1.64340	85.39480	82.50910	HepG2	DNAJC21
TNFRSF19	ENSG00000127863.11	1225.44380	3116.77210	-1.34670	82.31910	79.76220	HepG2	SAFB2
TNFRSF19	ENSG00000127863.11	3114.24770	1229.21510	1.34100	73.69590	71.31000	HepG2	UTP3
TNFRSF19	ENSG00000127863.11	825.95040	2904.58090	-1.81420	63.12920	60.93170	HepG2	RPLP0
TNFRSF19	ENSG00000127863.11	1886.84450	4665.25050	-1.30600	62.50540	59.62620	HepG2	EIF4G1
TNFRSF19	ENSG00000127863.11	3734.23420	1640.65440	1.18640	61.25550	59.17880	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 124 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TNFRSF19 is not available on ENCORE database.

5 RBPs can affect the splicing of TNFRSF19 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TNFRSF19	ENSG00000127863.11	chr13	+	24242830	24243236	24242118	24242221	24247510	24250232	-0.26800	0.00006	0.00175	excluded	HepG2	U2AF1
SE	TNFRSF19	ENSG00000127863.11	chr13	+	24159594	24159684	24153497	24153668	24164288	24164391	0.39200	0.00030	0.06553	included	HepG2	FUS
SE	TNFRSF19	ENSG00000127863.11	chr13	+	24159594	24159684	24153497	24153668	24164288	24164391	0.50700	0.00053	0.04116	included	HepG2	HNRNPL
SE	TNFRSF19	ENSG00000127863.11	chr13	+	24234503	24234629	24233188	24233353	24242118	24242221	-0.17000	0.00069	0.01491	excluded	HepG2	U2AF1
SE	TNFRSF19	ENSG00000127863.11	chr13	+	24159594	24159684	24153497	24153668	24164288	24164391	0.43800	0.00082	0.02290	included	HepG2	HNRNPK
SE	TNFRSF19	ENSG00000127863.11	chr13	+	24167483	24167594	24144508	24144987	24190005	24190184	-0.21000	0.00532	0.05571	excluded	HepG2	U2AF2

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TNFRSF19

General Information

Functions

Localization

Domains (AlphaFold: TNFRSF19)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TNFRSF19 is not avaliable on ENCORE database.

27 proteins are bound to TNFRSF19 RNA:

eCLIP assay for TNFRSF19 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TNFRSF19 is not available on ENCORE database.

123 RBPs can affect the gene expression of TNFRSF19 :

The Knockdown/knockout RNA-Seq assay for TNFRSF19 is not available on ENCORE database.

5 RBPs can affect the splicing of TNFRSF19 :

The Knockdown/knockout RNA-Seq assay for TNFRSF19 is not avaliable on ENCORE database.