RNF40

General Information

Gene Name : RNF40
Gene ID : ENSG00000103549.21
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF40)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF40	ENSG00000103549.21	36.44	37.51	36.97	ENCSR000AEF
HepG2	RNF40	ENSG00000103549.21	65.08	78.11	71.59	ENCSR985KAT
K562	RNF40	ENSG00000103549.21	77.03	77.12	77.08	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF40 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF40 RNA is bound by 27 proteins.

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eCLIP assay for RNF40 is not avaliable on ENCORE database.

27 proteins are bound to RNF40 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	30776514	30776630	+	CDS,intron-Distal	4.67309	22.13371	K562	ZNF622
chr16	30774880	30774965	+	intron-Distal,intron-Proximal	6.43098	18.62356	K562	AQR
chr16	30780180	30780311	+	CDS,intron-Proximal	3.92884	18.27527	K562	UCHL5
chr16	30773716	30773857	+	5'-UTR,intron-Distal,intron-Proximal	4.25684	17.82763	K562	BUD13
chr16	30780314	30780351	+	intron-Proximal	4.87488	16.50383	K562	AQR
chr16	30780307	30780314	+	CDS,intron-Proximal	5.25180	15.34985	K562	AQR
chr16	30773733	30773850	+	5'-UTR,intron-Distal,intron-Proximal	4.21391	14.93802	K562	AQR
chr16	30786207	30786305	+	3'-UTR	3.31063	14.87199	K562	UPF1
chr16	30775569	30775678	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.16364	13.83885	K562	ZNF622
chr16	30774738	30774824	+	CDS,intron-Distal,intron-Proximal	3.35496	13.13729	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 138 entries

eCLIP assay for RNF40 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNF40 is not available on ENCORE database.
100 RBPs can affect the levels of RNF40.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNF40 is not available on ENCORE database.

100 RBPs can affect the gene expression of RNF40 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF40	ENSG00000103549.17	1362.04430	3171.02640	-1.21920	28.82080	27.04880	K562	PUS1
RNF40	ENSG00000103549.17	3172.40030	1876.22210	0.75760	21.95040	20.36080	K562	FXR1
RNF40	ENSG00000103549.17	3823.36010	2551.58090	0.58330	18.37650	17.04060	HepG2	UTP3
RNF40	ENSG00000103549.17	2457.71660	1452.53040	0.75870	16.68610	15.64510	HepG2	TIAL1
RNF40	ENSG00000103549.17	3668.41650	1912.38700	0.93970	17.61800	15.13090	K562	EFTUD2
RNF40	ENSG00000103549.17	1777.78750	1040.28270	0.77300	16.57290	14.55480	K562	EIF3G
RNF40	ENSG00000103549.17	3086.34140	2181.87710	0.50020	14.87920	13.59230	HepG2	CKAP4
RNF40	ENSG00000103549.17	3395.21490	1860.98370	0.86730	15.12310	13.35510	K562	PRPF8
RNF40	ENSG00000103549.17	4695.35850	2805.63480	0.74280	14.02360	12.70770	HepG2	RPLP0
RNF40	ENSG00000103549.17	4019.92680	2093.44870	0.94120	13.99870	12.65950	HepG2	MATR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 119 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNF40 is not available on ENCORE database.

10 RBPs can affect the splicing of RNF40 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RNF40	ENSG00000103549.17	chr16	+	30780416	30780543	30780506	30780543	30780158	30780308	0.12300	0.00000	0.00000	longer	K562	AQR
RI	RNF40	ENSG00000103549.17	chr16	+	30780506	30780921	30780506	30780719	30780795	30780921	0.12400	0.00000	0.00000	included	K562	PUS1
RI	RNF40	ENSG00000103549.17	chr16	+	30780506	30780921	30780506	30780719	30780795	30780921	0.11400	0.00000	0.00000	included	K562	BUD13
RI	RNF40	ENSG00000103549.17	chr16	+	30780506	30780921	30780506	30780719	30780795	30780921	0.06300	0.00000	0.00013	included	HepG2	KHSRP
RI	RNF40	ENSG00000103549.17	chr16	+	30780506	30780921	30780506	30780719	30780795	30780921	0.07400	0.00000	0.00000	included	K562	AQR
SE	RNF40	ENSG00000103549.17	chr16	+	30777483	30777603	30776745	30776820	30777699	30777879	-0.14200	0.00002	0.00218	excluded	K562	EFTUD2
SE	RNF40	ENSG00000103549.17	chr16	+	30777483	30777603	30776745	30776820	30777699	30777879	-0.05900	0.00004	0.00079	excluded	K562	AQR
RI	RNF40	ENSG00000103549.17	chr16	+	30780506	30780921	30780506	30780719	30780795	30780921	0.08600	0.00007	0.00483	included	K562	SF3B1
RI	RNF40	ENSG00000103549.17	chr16	+	30780506	30780921	30780506	30780719	30780795	30780921	0.05100	0.00013	0.00159	included	HepG2	SF3B4
SE	RNF40	ENSG00000103549.17	chr16	+	30777483	30777603	30776745	30776820	30777699	30777879	-0.05500	0.00035	0.00838	excluded	HepG2	U2AF1

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF40

General Information

Functions

Localization

Domains (AlphaFold: RNF40)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF40 is not avaliable on ENCORE database.

27 proteins are bound to RNF40 RNA:

eCLIP assay for RNF40 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF40 is not available on ENCORE database.

100 RBPs can affect the gene expression of RNF40 :

The Knockdown/knockout RNA-Seq assay for RNF40 is not available on ENCORE database.

10 RBPs can affect the splicing of RNF40 :

The Knockdown/knockout RNA-Seq assay for RNF40 is not avaliable on ENCORE database.