RNF4

General Information

Gene Name : RNF4
Gene ID : ENSG00000063978.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF4	ENSG00000063978.15	53.94	59.70	56.82	ENCSR000AEF
HepG2	RNF4	ENSG00000063978.15	34.24	39.21	36.73	ENCSR985KAT
K562	RNF4	ENSG00000063978.15	29.19	30.13	29.66	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF4 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF4 RNA is bound by 41 proteins.

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eCLIP assay for RNF4 is not avaliable on ENCORE database.

41 proteins are bound to RNF4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	2502491	2502603	+	intron-Distal,intron-Proximal	6.98712	28.92001	K562	PRPF8
chr4	2502464	2502510	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.43929	26.29423	K562	AQR
chr4	2513709	2513735	+	CDS,intron-Distal,intron-Proximal	5.70019	20.69618	K562	AQR
chr4	2514099	2514212	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46963	18.61108	K562	SF3B4
chr4	2514137	2514205	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.87096	16.09300	HepG2	AQR
chr4	2560356	2560418	+	intron-Distal	4.79455	15.46231	HepG2	ILF3
chr4	2514354	2514366	+	intron-Distal,intron-Proximal	5.35652	15.39065	K562	AQR
chr4	2502433	2502491	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.53082	14.94247	K562	PRPF8
chr4	2513681	2513733	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.13409	13.77836	K562	PRPF8
chr4	2514127	2514211	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.08851	13.70821	HepG2	BUD13
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 139 entries

eCLIP assay for RNF4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNF4 is not available on ENCORE database.
82 RBPs can affect the levels of RNF4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNF4 is not available on ENCORE database.

82 RBPs can affect the gene expression of RNF4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF4	ENSG00000063978.11	5942.49840	1637.51210	1.85950	74.69570	72.03100	K562	AQR
RNF4	ENSG00000063978.11	778.92010	1901.74780	-1.28780	28.53490	26.53780	HepG2	SF3B1
RNF4	ENSG00000063978.11	582.45340	1309.79680	-1.16910	21.74320	19.99910	HepG2	HNRNPC
RNF4	ENSG00000063978.11	577.82780	1085.07920	-0.90910	20.20680	18.40800	HepG2	AKAP8L
RNF4	ENSG00000063978.11	684.27750	1264.35320	-0.88570	16.73780	15.69580	HepG2	TIAL1
RNF4	ENSG00000063978.11	1370.16290	814.89240	0.74960	14.73860	13.45500	K562	FXR1
RNF4	ENSG00000063978.11	2364.24180	1483.69510	0.67210	14.05150	13.06630	HepG2	RBM22
RNF4	ENSG00000063978.11	2552.06750	1531.34070	0.73680	14.73930	12.96070	K562	SF3A3
RNF4	ENSG00000063978.11	2375.23580	1675.78530	0.50310	11.72590	10.88540	HepG2	SRFBP1
RNF4	ENSG00000063978.11	690.55950	1199.02050	-0.79600	11.76610	10.60930	K562	HNRNPC
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 101 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNF4 is not available on ENCORE database.

4 RBPs can affect the splicing of RNF4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	RNF4	ENSG00000063978.11	chr4	+	2498671	2498848			2498733	2498848	2492032	2492229	0.10300	0.00000	0.00000	longer	K562	AQR
MXE	RNF4	ENSG00000063978.11	chr4	+	2498733	2498848	2502385	2502465	2492063	2492229	2513682	2513692	0.17100	0.00049	0.01543	1included	K562	HNRNPUL1
MXE	RNF4	ENSG00000063978.11	chr4	+	2498733	2498848	2502385	2502465	2492063	2492229	2513682	2513692	0.17600	0.00072	0.01463	1included	K562	DROSHA
SE	RNF4	ENSG00000063978.11	chr4	+	2492032	2492229			2470833	2470985	2498733	2498739	-0.07800	0.00302	0.03080	excluded	K562	AQR
MXE	RNF4	ENSG00000063978.11	chr4	+	2498733	2498848	2502385	2502465	2492063	2492229	2513682	2513692	-0.18200	0.00487	0.07904	2included	K562	SUPV3L1
MXE	RNF4	ENSG00000063978.11	chr4	+	2498733	2498848	2502385	2502465	2492063	2492229	2513682	2513692	-0.09100	0.01686	0.09603	2included	K562	AQR

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF4

General Information

Functions

Localization

Domains (AlphaFold: RNF4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF4 is not avaliable on ENCORE database.

41 proteins are bound to RNF4 RNA:

eCLIP assay for RNF4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF4 is not available on ENCORE database.

82 RBPs can affect the gene expression of RNF4 :

The Knockdown/knockout RNA-Seq assay for RNF4 is not available on ENCORE database.

4 RBPs can affect the splicing of RNF4 :

The Knockdown/knockout RNA-Seq assay for RNF4 is not avaliable on ENCORE database.