RBM3

General Information

Gene Name : RBM3
Gene ID : ENSG00000102317.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RBM3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RBM3	ENSG00000102317.17	274.36	318.15	296.25	ENCSR000AEF
HepG2	RBM3	ENSG00000102317.17	100.42	122.50	111.46	ENCSR985KAT
K562	RBM3	ENSG00000102317.17	184.16	148.79	166.47	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
RNA Bind-n-Seq	RBNS: RBM3	ENCSR379HWF	RBM3	cell-free sample	Released

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

GeneName	gene_aliases	Status	Project	Note
RBM3	RBM3		Released	ENCODE4

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RBM3 is not avaliable on ENCORE database.

The binding motifs of RBM3

Proteins bound to RNA

RBM3 RNA is bound by 31 proteins.

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eCLIP assay for RBM3 is not avaliable on ENCORE database.

31 proteins are bound to RBM3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	48434639	48434733	+	CDS,intron-Proximal	4.19239	71.72825	K562	SF3B4
chrX	48434116	48434169	+	5'-UTR,intron-Distal,intron-Proximal	4.62293	46.42331	HepG2	EFTUD2
chrX	48434114	48434170	+	5'-UTR,intron-Distal,intron-Proximal	3.92447	43.63805	K562	EFTUD2
chrX	48434111	48434132	+	5'-UTR,intron-Distal,intron-Proximal	5.03405	40.54109	K562	AQR
chrX	48434132	48434160	+	5'-UTR,intron-Distal,intron-Proximal	5.18636	39.12972	K562	AQR
chrX	48434884	48434988	+	CDS,intron-Proximal	3.61542	38.78611	K562	EFTUD2
chrX	48432993	48433027	+	intron-Proximal	5.05415	33.86976	K562	AQR
chrX	48435862	48435911	+	3'-UTR,CDS	3.70089	32.69396	K562	PABPC4
chrX	48434664	48434735	+	CDS,intron-Proximal	3.52013	31.35036	K562	AQR
chrX	48432960	48432993	+	5'-UTR,intron-Proximal	4.37775	31.17496	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 114 entries

eCLIP assay for RBM3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RBM3 is not available on ENCORE database.
117 RBPs can affect the levels of RBM3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RBM3 is not available on ENCORE database.

117 RBPs can affect the gene expression of RBM3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RBM3	ENSG00000102317.13	1090.98330	2962.98080	-1.44140	46.77690	42.39080	K562	HNRNPH1
RBM3	ENSG00000102317.13	3395.20490	8449.86420	-1.31540	42.29570	39.07080	K562	PUF60
RBM3	ENSG00000102317.13	1376.64740	3161.95450	-1.19970	34.00620	32.20840	HepG2	PUF60
RBM3	ENSG00000102317.13	1701.19780	3741.28570	-1.13700	33.35650	31.34780	K562	HNRNPC
RBM3	ENSG00000102317.13	1148.95000	2754.24200	-1.26130	32.06910	30.31790	HepG2	RPLP0
RBM3	ENSG00000102317.13	3739.64160	1748.46990	1.09670	28.63400	26.27560	HepG2	EWSR1
RBM3	ENSG00000102317.13	1995.80340	3243.45150	-0.70060	23.58960	22.41750	HepG2	SSB
RBM3	ENSG00000102317.13	1408.30890	2557.09010	-0.86050	21.60940	19.86930	HepG2	HNRNPF
RBM3	ENSG00000102317.13	3645.91810	2169.42120	0.74890	20.96370	19.61990	HepG2	TAF15
RBM3	ENSG00000102317.13	5481.06860	3735.66450	0.55300	20.36680	19.33410	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 144 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RBM3 is not available on ENCORE database.

33 RBPs can affect the splicing of RBM3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434738	0.06900	0.00002	included	K562	SF3B4
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434807	0.21700	0.00000	included	K562	AQR
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434807	0.10400	0.00017	included	HepG2	UCHL5
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434807	0.13100	0.00000	included	HepG2	SF3A3
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434807	0.07700	0.00002	included	HepG2	BCCIP
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434807	0.12000	0.00000	included	K562	U2AF2
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434738	0.05200	0.00029	included	K562	AGGF1
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434807	0.06600	0.00001	included	K562	SF3B1
SE	RBM3	ENSG00000102317.13	chrX	+	48434202	48434471	48433948	48434055	48434701	48434807	0.13800	0.00000	included	K562	HNRNPC
A5SS	RBM3	ENSG00000102317.13	chrX	+	48433948	48434471	48433948	48434055	48434701	48434807	0.11100	0.00001	longer	K562	U2AF1

Showing 1 to 10 of 76 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBM3

General Information

Functions

Localization

Domains (AlphaFold: RBM3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RBM3 is not avaliable on ENCORE database.

31 proteins are bound to RBM3 RNA:

eCLIP assay for RBM3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RBM3 is not available on ENCORE database.

117 RBPs can affect the gene expression of RBM3 :

The Knockdown/knockout RNA-Seq assay for RBM3 is not available on ENCORE database.

33 RBPs can affect the splicing of RBM3 :

The Knockdown/knockout RNA-Seq assay for RBM3 is not avaliable on ENCORE database.