PIGS

General Information

Gene Name : PIGS
Gene ID : ENSG00000087111.20
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PIGS)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PIGS	ENSG00000087111.20	39.16	48.05	43.60	ENCSR000AEF
HepG2	PIGS	ENSG00000087111.20	60.10	45.91	53.00	ENCSR985KAT
K562	PIGS	ENSG00000087111.20	99.82	92.61	96.22	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PIGS is not avaliable on ENCORE database.

Proteins bound to RNA

PIGS RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for PIGS is not avaliable on ENCORE database.

23 proteins are bound to PIGS RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	26880604	26880688	-	3'-UTR,intron-Distal	6.19519	74.91482	K562	TARDBP
chr17	26880675	26880755	-	3'-UTR,intron-Distal,intron-Proximal	3.55206	42.14639	K562	EIF4G2
chr17	26880620	26880675	-	3'-UTR,intron-Distal	4.85554	37.39841	K562	EIF4G2
chr17	26880595	26880690	-	3'-UTR,intron-Distal	4.11146	29.13283	K562	UPF1
chr17	26898100	26898175	-	CDS,intron-Distal	4.33362	23.82117	HepG2	DDX3X
chr17	26880600	26880694	-	3'-UTR,intron-Distal	3.14853	15.39513	K562	IGF2BP1
chr17	26888509	26888556	-	3'-UTR,CDS,intron-Distal	3.68269	11.37584	K562	YBX3
chr17	26880799	26880861	-	3'-UTR,intron-Distal,intron-Proximal	4.60257	10.80373	K562	IGF2BP2
chr17	26898468	26898529	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.00127	10.30616	HepG2	DDX3X
chr17	26880546	26880595	-	3'-UTR,intron-Distal	3.80841	9.69901	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 63 entries

eCLIP assay for PIGS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PIGS is not available on ENCORE database.
109 RBPs can affect the levels of PIGS.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PIGS is not available on ENCORE database.

109 RBPs can affect the gene expression of PIGS :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PIGS	ENSG00000087111.16	3358.80770	1533.92350	1.13060	71.91900	70.11310	HepG2	ZNF622
PIGS	ENSG00000087111.16	938.05660	2136.50560	-1.18750	51.34980	49.90270	HepG2	SRFBP1
PIGS	ENSG00000087111.16	903.00940	1854.96900	-1.03860	36.37610	35.00740	HepG2	SSB
PIGS	ENSG00000087111.16	935.98470	1924.86290	-1.04020	35.28930	33.77880	HepG2	PTBP1
PIGS	ENSG00000087111.16	1209.16420	2263.21760	-0.90440	29.32150	27.71830	HepG2	ETF1
PIGS	ENSG00000087111.16	2627.40600	4226.47980	-0.68580	22.79300	21.11130	K562	DDX47
PIGS	ENSG00000087111.16	700.18930	1757.57710	-1.32780	21.55900	20.05280	HepG2	DDX6
PIGS	ENSG00000087111.16	2062.15350	1063.20760	0.95560	18.05860	16.72730	HepG2	BOP1
PIGS	ENSG00000087111.16	890.09090	1453.29450	-0.70730	17.08570	15.78710	HepG2	PUS1
PIGS	ENSG00000087111.16	776.08230	1369.26240	-0.81910	15.33720	13.96280	HepG2	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 131 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PIGS is not available on ENCORE database.

4 RBPs can affect the splicing of PIGS :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PIGS	ENSG00000087111.16	chr17	-	26888761	26888931			26888439	26888647	26890448	26890610	0.05700	0.00000	0.00000	included	K562	AQR
SE	PIGS	ENSG00000087111.16	chr17	-	26888439	26888647			26887066	26887209	26890448	26890540	-0.09200	0.00000	0.00004	excluded	K562	AQR
SE	PIGS	ENSG00000087111.16	chr17	-	26888439	26888647			26887066	26887209	26890448	26890540	-0.18900	0.00000	0.00000	excluded	K562	HNRNPC
A3SS	PIGS	ENSG00000087111.16	chr17	-	26883797	26884026			26883797	26883990	26885493	26885652	0.05600	0.00000	0.00000	longer	K562	AQR
RI	PIGS	ENSG00000087111.16	chr17	-	26897869	26898206			26897869	26897981	26898066	26898206	0.18800	0.00000	0.00000	included	K562	AQR
MXE	PIGS	ENSG00000087111.16	chr17	-	26888439	26888647	26890448	26890610	26887066	26887209	26890835	26890925	0.11000	0.00000	0.00002	1included	K562	AQR
A3SS	PIGS	ENSG00000087111.16	chr17	-	26883183	26883390			26883183	26883284	26883844	26883990	0.05500	0.00006	0.00056	longer	K562	AQR
RI	PIGS	ENSG00000087111.16	chr17	-	26897869	26898206			26897869	26897981	26898066	26898206	-0.05200	0.00007	0.01307	excluded	K562	ZC3H8
SE	PIGS	ENSG00000087111.16	chr17	-	26888439	26888647			26887066	26887209	26890448	26890540	-0.07000	0.00029	0.02871	excluded	K562	SUPV3L1

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PIGS

General Information

Functions

Localization

Domains (AlphaFold: PIGS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PIGS is not avaliable on ENCORE database.

23 proteins are bound to PIGS RNA:

eCLIP assay for PIGS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PIGS is not available on ENCORE database.

109 RBPs can affect the gene expression of PIGS :

The Knockdown/knockout RNA-Seq assay for PIGS is not available on ENCORE database.

4 RBPs can affect the splicing of PIGS :

The Knockdown/knockout RNA-Seq assay for PIGS is not avaliable on ENCORE database.