PDZK1

General Information

Gene Name : PDZK1
Gene ID : ENSG00000174827.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PDZK1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PDZK1	ENSG00000174827.13	0.10	0.18	0.14	ENCSR000AEF
HepG2	PDZK1	ENSG00000174827.13	28.54	42.73	35.63	ENCSR985KAT
K562	PDZK1	ENSG00000174827.13	0.02	0.03	0.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PDZK1 is not avaliable on ENCORE database.

Proteins bound to RNA

PDZK1 RNA is bound by 4 proteins.

CanvasJS.com

eCLIP assay for PDZK1 is not avaliable on ENCORE database.

4 proteins are bound to PDZK1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	145737695	145737758	+	intron-Distal	4.20618	9.41297	HepG2	PTBP1
chr1	145739590	145739679	+	intron-Distal	3.94453	8.52957	HepG2	PTBP1
chr1	145747037	145747093	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.11390	8.51432	HepG2	BCLAF1
chr1	145747093	145747159	+	CDS	4.21507	7.49468	HepG2	BCLAF1
chr1	145761251	145761317	+	CDS	3.08772	6.07405	HepG2	GRWD1
chr1	145748491	145748588	+	CDS,intron-Proximal	3.95396	5.97823	HepG2	BCLAF1
chr1	145747042	145747104	+	3'-UTR,5'-UTR,CDS	4.34433	5.11007	HepG2	GRWD1
chr1	145747211	145747254	+	CDS,intron-Proximal	3.24259	5.00751	HepG2	BCLAF1
chr1	145747104	145747166	+	CDS	4.15373	4.69889	HepG2	GRWD1
chr1	145745082	145745129	+	intron-Distal	3.80902	3.39864	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 12 entries

eCLIP assay for PDZK1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PDZK1 is not available on ENCORE database.
140 RBPs can affect the levels of PDZK1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PDZK1 is not available on ENCORE database.

140 RBPs can affect the gene expression of PDZK1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PDZK1	ENSG00000174827.9	522.24220	2528.73050	-2.27560	162.34030	159.50200	HepG2	SRSF9
PDZK1	ENSG00000174827.9	181.85660	1075.77600	-2.56450	112.12030	109.75110	HepG2	ACO1
PDZK1	ENSG00000174827.9	1771.58140	558.25280	1.66590	74.92190	72.51610	HepG2	SRSF7
PDZK1	ENSG00000174827.9	1186.26080	2977.94480	-1.32790	67.10090	64.93950	HepG2	SF3B4
PDZK1	ENSG00000174827.9	777.08810	1895.35480	-1.28630	64.00160	62.28470	HepG2	ZNF622
PDZK1	ENSG00000174827.9	1167.11670	2860.21710	-1.29320	61.69360	59.89300	HepG2	PTBP1
PDZK1	ENSG00000174827.9	1862.74660	559.51310	1.73510	60.92570	58.34110	HepG2	IGF2BP1
PDZK1	ENSG00000174827.9	404.59190	1130.10460	-1.48190	53.99020	52.06500	HepG2	PUM1
PDZK1	ENSG00000174827.9	4648.99980	1359.97510	1.77320	52.21790	50.67710	HepG2	SSB
PDZK1	ENSG00000174827.9	327.11850	1051.13010	-1.68410	52.51990	50.28330	HepG2	SRSF5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 141 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PDZK1 is not available on ENCORE database.

8 RBPs can affect the splicing of PDZK1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PDZK1	ENSG00000174827.9	chr1	+	145758845	145758901	145756416	145756613	145761177	145761402	0.48600	0.00000	0.00000	included	HepG2	HNRNPK
SE	PDZK1	ENSG00000174827.9	chr1	+	145752427	145752564	145748337	145748587	145753954	145754150	-0.13300	0.00000	0.00007	excluded	HepG2	HNRNPK
SE	PDZK1	ENSG00000174827.9	chr1	+	145758845	145758901	145756416	145756613	145761177	145761402	0.26700	0.00014	0.00973	included	HepG2	SF3B4
SE	PDZK1	ENSG00000174827.9	chr1	+	145752427	145752564	145748337	145748587	145753954	145754150	-0.08100	0.00020	0.02408	excluded	HepG2	G3BP1
SE	PDZK1	ENSG00000174827.9	chr1	+	145763419	145763467	145762038	145762329	145763569	145763632	0.07300	0.00045	0.06961	included	HepG2	TIA1
SE	PDZK1	ENSG00000174827.9	chr1	+	145763419	145763467	145762038	145762329	145763569	145763632	0.05900	0.00088	0.02302	included	HepG2	SRSF1
SE	PDZK1	ENSG00000174827.9	chr1	+	145752427	145752564	145748337	145748587	145753954	145754150	-0.08600	0.00123	0.04978	excluded	HepG2	MATR3
SE	PDZK1	ENSG00000174827.9	chr1	+	145752427	145752564	145748337	145748587	145753954	145754150	-0.08100	0.00169	0.07166	excluded	HepG2	PCBP1
SE	PDZK1	ENSG00000174827.9	chr1	+	145752427	145752564	145748337	145748587	145753954	145754150	0.07900	0.00412	0.09139	included	HepG2	SF3A3

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PDZK1

General Information

Functions

Localization

Domains (AlphaFold: PDZK1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PDZK1 is not avaliable on ENCORE database.

4 proteins are bound to PDZK1 RNA:

eCLIP assay for PDZK1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PDZK1 is not available on ENCORE database.

140 RBPs can affect the gene expression of PDZK1 :

The Knockdown/knockout RNA-Seq assay for PDZK1 is not available on ENCORE database.

8 RBPs can affect the splicing of PDZK1 :

The Knockdown/knockout RNA-Seq assay for PDZK1 is not avaliable on ENCORE database.