PAPSS1

General Information

Gene Name : PAPSS1
Gene ID : ENSG00000138801.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PAPSS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PAPSS1	ENSG00000138801.8	21.75	20.64	21.20	ENCSR000AEF
HepG2	PAPSS1	ENSG00000138801.8	62.69	72.94	67.81	ENCSR985KAT
K562	PAPSS1	ENSG00000138801.8	25.39	28.19	26.79	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PAPSS1 is not avaliable on ENCORE database.

Proteins bound to RNA

PAPSS1 RNA is bound by 22 proteins.

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eCLIP assay for PAPSS1 is not avaliable on ENCORE database.

22 proteins are bound to PAPSS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	108534882	108534958	-	3'-UTR,intron-Distal	4.73105	13.43066	K562	TIA1
chr4	108535056	108535138	-	3'-UTR,intron-Distal	5.31798	10.29472	K562	TIA1
chr4	108603169	108603218	-	CDS,intron-Distal,intron-Proximal	5.58114	9.78817	HepG2	BCLAF1
chr4	108534995	108535051	-	3'-UTR,intron-Distal	4.88975	9.59522	K562	PABPC4
chr4	108599830	108599905	-	intron-Distal	4.23932	9.30950	HepG2	SUGP2
chr4	108535265	108535361	-	3'-UTR,intron-Distal	5.48554	7.71888	HepG2	SUB1
chr4	108574654	108574728	-	CDS,intron-Distal	3.17163	7.61291	HepG2	BCLAF1
chr4	108535069	108535146	-	3'-UTR,intron-Distal	3.78099	7.45406	HepG2	FUBP3
chr4	108600580	108600644	-	intron-Distal	4.04598	7.29258	HepG2	SUGP2
chr4	108539656	108539760	-	intron-Distal	3.77452	6.95705	HepG2	PCBP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 38 entries

eCLIP assay for PAPSS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PAPSS1 is not available on ENCORE database.
132 RBPs can affect the levels of PAPSS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PAPSS1 is not available on ENCORE database.

132 RBPs can affect the gene expression of PAPSS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PAPSS1	ENSG00000138801.4	552.03550	2038.56930	-1.88470	58.52500	56.50100	HepG2	BOP1
PAPSS1	ENSG00000138801.4	1610.01810	3648.42010	-1.18020	57.87040	55.06570	HepG2	EIF4G1
PAPSS1	ENSG00000138801.4	932.40020	2245.74550	-1.26820	47.38110	44.97730	HepG2	DNAJC21
PAPSS1	ENSG00000138801.4	971.61960	2434.31890	-1.32510	45.27130	43.70170	HepG2	TIAL1
PAPSS1	ENSG00000138801.4	1216.19560	2505.22940	-1.04260	42.67640	40.52970	HepG2	HNRNPU
PAPSS1	ENSG00000138801.4	304.86950	1034.60730	-1.76280	41.68900	39.46590	K562	HNRNPC
PAPSS1	ENSG00000138801.4	1175.80070	2231.02080	-0.92410	35.57460	33.65770	HepG2	SAFB2
PAPSS1	ENSG00000138801.4	1088.51240	3023.92160	-1.47410	33.98420	32.05910	HepG2	DDX3X
PAPSS1	ENSG00000138801.4	2381.12210	3859.75600	-0.69690	26.33120	25.19690	HepG2	SRFBP1
PAPSS1	ENSG00000138801.4	2333.21600	3698.04550	-0.66440	26.90440	25.04000	HepG2	DAZAP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 161 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PAPSS1 is not available on ENCORE database.

4 RBPs can affect the splicing of PAPSS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PAPSS1	ENSG00000138801.4	chr4	-	108576123	108576192			108575850	108576056	108578051	108578163	0.10200	0.00000	0.00009	included	HepG2	PRPF8
SE	PAPSS1	ENSG00000138801.4	chr4	-	108576123	108576192			108575850	108576056	108578051	108578163	0.14600	0.00000	0.00038	included	K562	EFTUD2
SE	PAPSS1	ENSG00000138801.4	chr4	-	108576123	108576192			108575850	108576056	108578051	108578163	0.06200	0.00000	0.00005	included	HepG2	SF3A3
MXE	PAPSS1	ENSG00000138801.4	chr4	-	108575850	108576056	108576123	108576192	108574646	108574782	108578051	108578163	0.05600	0.00005	0.00361	1included	HepG2	SF3A3
MXE	PAPSS1	ENSG00000138801.4	chr4	-	108614926	108615162	108622326	108622441	108608194	108608333	108641275	108641608	0.10500	0.00358	0.09448	1included	HepG2	BCCIP

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PAPSS1

General Information

Functions

Localization

Domains (AlphaFold: PAPSS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PAPSS1 is not avaliable on ENCORE database.

22 proteins are bound to PAPSS1 RNA:

eCLIP assay for PAPSS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PAPSS1 is not available on ENCORE database.

132 RBPs can affect the gene expression of PAPSS1 :

The Knockdown/knockout RNA-Seq assay for PAPSS1 is not available on ENCORE database.

4 RBPs can affect the splicing of PAPSS1 :

The Knockdown/knockout RNA-Seq assay for PAPSS1 is not avaliable on ENCORE database.