MCFD2

General Information

Gene Name : MCFD2
Gene ID : ENSG00000180398.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MCFD2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MCFD2	ENSG00000180398.12	27.26	27.40	27.33	ENCSR000AEF
HepG2	MCFD2	ENSG00000180398.12	131.77	177.62	154.69	ENCSR985KAT
K562	MCFD2	ENSG00000180398.12	79.75	82.51	81.13	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MCFD2 is not avaliable on ENCORE database.

Proteins bound to RNA

MCFD2 RNA is bound by 27 proteins.

CanvasJS.com

eCLIP assay for MCFD2 is not avaliable on ENCORE database.

27 proteins are bound to MCFD2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	47142857	47142932	-	5'-UTR,intron-Distal,intron-Proximal	4.88026	58.74514	HepG2	DDX3X
chr2	47136187	47136258	-	CDS,intron-Distal,intron-Proximal	4.12644	42.63528	HepG2	DDX3X
chr2	47129355	47129437	-	3'-UTR,intron-Distal	5.36872	32.05173	HepG2	LIN28B
chr2	47129601	47129678	-	3'-UTR,intron-Distal	4.39095	31.49686	K562	UPF1
chr2	47130050	47130130	-	3'-UTR,intron-Distal	7.08733	30.41456	K562	UPF1
chr2	47129029	47129166	-	3'-UTR,intron-Distal	5.66889	28.70680	HepG2	FUBP3
chr2	47136179	47136264	-	CDS,intron-Distal,intron-Proximal	4.52267	25.09643	HepG2	RPS3
chr2	47129547	47129610	-	3'-UTR,intron-Distal	4.86021	24.19495	HepG2	UPF1
chr2	47129546	47129576	-	3'-UTR,intron-Distal	3.59373	23.69843	K562	UPF1
chr2	47129519	47129546	-	3'-UTR,intron-Distal	3.65555	22.24021	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 102 entries

eCLIP assay for MCFD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MCFD2 is not available on ENCORE database.
98 RBPs can affect the levels of MCFD2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MCFD2 is not available on ENCORE database.

98 RBPs can affect the gene expression of MCFD2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MCFD2	ENSG00000180398.7	2159.65890	12614.78090	-2.54620	99999.99999	99999.99999	HepG2	ETF1
MCFD2	ENSG00000180398.7	3490.45020	8326.61470	-1.25430	90.04300	87.25430	HepG2	HNRNPU
MCFD2	ENSG00000180398.7	3222.01560	7847.36060	-1.28420	40.34330	38.55530	HepG2	BOP1
MCFD2	ENSG00000180398.7	7945.35340	13121.07150	-0.72370	31.12150	29.68600	HepG2	PTBP1
MCFD2	ENSG00000180398.7	7922.17780	4537.95350	0.80380	30.71660	28.79290	K562	EIF2S2
MCFD2	ENSG00000180398.7	4777.35210	7415.20880	-0.63430	29.24900	27.46910	HepG2	SAFB2
MCFD2	ENSG00000180398.7	15057.29780	10534.66290	0.51520	27.76320	26.48980	HepG2	ZNF622
MCFD2	ENSG00000180398.7	8770.01700	14602.85420	-0.73560	26.18490	24.86540	HepG2	NELFE
MCFD2	ENSG00000180398.7	2887.86150	8680.68650	-1.58780	25.69080	22.73410	HepG2	PRPF6
MCFD2	ENSG00000180398.7	8653.86980	14211.37140	-0.71560	23.32830	21.77120	HepG2	QKI
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 113 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MCFD2 is not available on ENCORE database.

21 RBPs can affect the splicing of MCFD2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	MCFD2	ENSG00000180398.7	chr2	-	47136161	47136316	47134948	47135108	47142861	47142930	0.07700	0.00000	0.00210	included	K562	MATR3
SE	MCFD2	ENSG00000180398.7	chr2	-	47137918	47138012	47136161	47136316	47142861	47142949	-0.05500	0.00000	0.00002	excluded	K562	SUPV3L1
SE	MCFD2	ENSG00000180398.7	chr2	-	47136161	47136316	47129012	47132733	47142861	47142930	-0.08400	0.00000	0.00000	excluded	K562	PUS1
SE	MCFD2	ENSG00000180398.7	chr2	-	47136161	47136316	47134948	47135108	47142861	47142930	-0.07500	0.00000	0.00006	excluded	HepG2	SRSF1
SE	MCFD2	ENSG00000180398.7	chr2	-	47139681	47139797	47136161	47136316	47142861	47142919	-0.06500	0.00000	0.00044	excluded	K562	TRA2A
SE	MCFD2	ENSG00000180398.7	chr2	-	47139681	47139797	47136161	47136316	47142861	47142919	-0.06200	0.00000	0.00006	excluded	K562	TARDBP
A3SS	MCFD2	ENSG00000180398.7	chr2	-	47132604	47132825	47132604	47132733	47134948	47135175	0.05700	0.00000	0.00000	longer	K562	AQR
A3SS	MCFD2	ENSG00000180398.7	chr2	-	47134948	47135175	47134948	47135108	47136161	47136316	0.08000	0.00000	0.00000	longer	K562	AQR
SE	MCFD2	ENSG00000180398.7	chr2	-	47139681	47139797	47136161	47136316	47142861	47142919	-0.05500	0.00001	0.00771	excluded	K562	IGF2BP2
SE	MCFD2	ENSG00000180398.7	chr2	-	47139681	47139797	47136161	47136316	47142861	47142919	-0.05800	0.00001	0.00052	excluded	K562	SRSF1

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MCFD2

General Information

Functions

Localization

Domains (AlphaFold: MCFD2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MCFD2 is not avaliable on ENCORE database.

27 proteins are bound to MCFD2 RNA:

eCLIP assay for MCFD2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MCFD2 is not available on ENCORE database.

98 RBPs can affect the gene expression of MCFD2 :

The Knockdown/knockout RNA-Seq assay for MCFD2 is not available on ENCORE database.

21 RBPs can affect the splicing of MCFD2 :

The Knockdown/knockout RNA-Seq assay for MCFD2 is not avaliable on ENCORE database.