MBD3

General Information

Gene Name : MBD3
Gene ID : ENSG00000071655.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MBD3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MBD3	ENSG00000071655.17	1.83	4.50	3.17	ENCSR000AEF
HepG2	MBD3	ENSG00000071655.17	43.82	4.34	24.08	ENCSR985KAT
K562	MBD3	ENSG00000071655.17	28.77	5.18	16.98	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MBD3 is not avaliable on ENCORE database.

Proteins bound to RNA

MBD3 RNA is bound by 36 proteins.

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eCLIP assay for MBD3 is not avaliable on ENCORE database.

36 proteins are bound to MBD3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	1592554	1592747	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.35109	37.35228	K562	UPF1
chr19	1578032	1578158	-	3'-UTR,intron-Distal	7.12651	35.65601	HepG2	UPF1
chr19	1577446	1577537	-	3'-UTR,intron-Distal	6.93269	31.21732	HepG2	UPF1
chr19	1577840	1577940	-	3'-UTR,intron-Distal,intron-Proximal	6.84070	28.59572	HepG2	UPF1
chr19	1592627	1592683	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.07095	26.73444	HepG2	UPF1
chr19	1592626	1592699	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.42183	23.47850	HepG2	DDX3X
chr19	1592683	1592761	-	5'-UTR,intron-Distal,intron-Proximal	4.77820	23.17057	HepG2	UPF1
chr19	1585203	1585372	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.51519	22.04028	HepG2	CSTF2T
chr19	1577615	1577683	-	3'-UTR,intron-Distal	5.54610	21.20565	HepG2	UPF1
chr19	1577222	1577293	-	3'-UTR,intron-Distal	6.39834	20.84685	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 170 entries

eCLIP assay for MBD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MBD3 is not available on ENCORE database.
104 RBPs can affect the levels of MBD3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MBD3 is not available on ENCORE database.

104 RBPs can affect the gene expression of MBD3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MBD3	ENSG00000071655.13	997.55100	330.60540	1.59320	57.52810	55.55680	HepG2	PUM1
MBD3	ENSG00000071655.13	958.82170	307.50430	1.64060	50.42690	48.23430	HepG2	SRSF5
MBD3	ENSG00000071655.13	921.14290	277.15400	1.73260	43.14120	40.65910	K562	PTBP1
MBD3	ENSG00000071655.13	177.11070	795.14980	-2.16660	40.42090	38.60800	HepG2	TAF15
MBD3	ENSG00000071655.13	793.78210	298.63970	1.41020	37.91880	35.95800	HepG2	SLBP
MBD3	ENSG00000071655.13	894.86180	349.70020	1.35540	34.80460	33.02560	HepG2	SUCLG1
MBD3	ENSG00000071655.13	838.17870	285.24260	1.55500	32.16980	29.09570	K562	MAGOH
MBD3	ENSG00000071655.13	761.84050	265.23220	1.52210	29.78310	26.87450	K562	TIA1
MBD3	ENSG00000071655.13	836.30750	311.42260	1.42510	27.06340	25.45910	HepG2	PUF60
MBD3	ENSG00000071655.13	476.13510	148.97720	1.67620	26.28840	24.19210	HepG2	PPIL4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 119 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MBD3 is not available on ENCORE database.

4 RBPs can affect the splicing of MBD3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	MBD3	ENSG00000071655.13	chr19	-	1583251	1583379			1582620	1582711	1584538	1584572	0.35100	0.00000	0.00000	included	K562	HNRNPC
A3SS	MBD3	ENSG00000071655.13	chr19	-	1581157	1581388			1581157	1581268	1582620	1582795	0.09900	0.00000	0.00000	longer	K562	AQR
A3SS	MBD3	ENSG00000071655.13	chr19	-	1582596	1582795			1582596	1582711	1584538	1584704	0.05400	0.00001	0.00008	longer	K562	AQR
MXE	MBD3	ENSG00000071655.13	chr19	-	1581090	1581268	1582620	1582711	1576677	1578537	1584538	1584676	0.16400	0.00094	0.01746	1included	K562	DROSHA
MXE	MBD3	ENSG00000071655.13	chr19	-	1581090	1581268	1582620	1582711	1576677	1578537	1584538	1584676	0.11600	0.00603	0.07043	1included	K562	HNRNPUL1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MBD3

General Information

Functions

Localization

Domains (AlphaFold: MBD3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MBD3 is not avaliable on ENCORE database.

36 proteins are bound to MBD3 RNA:

eCLIP assay for MBD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MBD3 is not available on ENCORE database.

104 RBPs can affect the gene expression of MBD3 :

The Knockdown/knockout RNA-Seq assay for MBD3 is not available on ENCORE database.

4 RBPs can affect the splicing of MBD3 :

The Knockdown/knockout RNA-Seq assay for MBD3 is not avaliable on ENCORE database.