LSM14B

General Information

Gene Name : LSM14B
Gene ID : ENSG00000149657.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LSM14B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LSM14B	ENSG00000149657.19	5.63	10.25	7.94	ENCSR000AEF
HepG2	LSM14B	ENSG00000149657.19	68.52	32.74	50.63	ENCSR985KAT
K562	LSM14B	ENSG00000149657.19	18.05	13.09	15.57	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LSM14B is not avaliable on ENCORE database.

Proteins bound to RNA

LSM14B RNA is bound by 38 proteins.

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eCLIP assay for LSM14B is not avaliable on ENCORE database.

38 proteins are bound to LSM14B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	60709727	60709812	+	3'-UTR	6.84202	81.98630	K562	UPF1
chr20	60709812	60709898	+	3'-UTR	7.38940	78.89119	K562	UPF1
chr20	60709724	60709803	+	3'-UTR	5.38285	67.31570	K562	FAM120A
chr20	60709841	60709912	+	3'-UTR	6.01467	61.09584	K562	FAM120A
chr20	60701484	60701532	+	CDS,intron-Proximal	5.99030	50.59908	HepG2	PRPF8
chr20	60701415	60701484	+	5'-UTR,CDS	4.59098	47.83410	HepG2	PRPF8
chr20	60709726	60709833	+	3'-UTR	5.57119	41.72218	HepG2	UPF1
chr20	60710157	60710274	+	3'-UTR	4.46656	40.73831	K562	DDX6
chr20	60709814	60709839	+	3'-UTR	5.17977	32.21940	K562	FAM120A
chr20	60697540	60697665	+	5'-UTR	3.53177	31.35362	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 108 entries

eCLIP assay for LSM14B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LSM14B is not available on ENCORE database.
89 RBPs can affect the levels of LSM14B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LSM14B is not available on ENCORE database.

89 RBPs can affect the gene expression of LSM14B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LSM14B	ENSG00000149657.15	2369.58790	1283.18140	0.88480	27.67430	26.32930	HepG2	NELFE
LSM14B	ENSG00000149657.15	2183.37640	1252.98250	0.80110	24.15580	23.06040	HepG2	SRSF1
LSM14B	ENSG00000149657.15	267.49300	772.88660	-1.53080	23.19590	20.97520	HepG2	TFIP11
LSM14B	ENSG00000149657.15	1911.86510	1195.11420	0.67770	16.15490	14.86760	HepG2	RECQL
LSM14B	ENSG00000149657.15	2456.09860	1277.05680	0.94340	15.00400	13.52870	HepG2	FXR1
LSM14B	ENSG00000149657.15	3424.60060	2363.43090	0.53500	13.58530	12.41790	HepG2	ETF1
LSM14B	ENSG00000149657.15	1468.69790	816.29420	0.84730	13.42880	12.17720	HepG2	HNRNPA1
LSM14B	ENSG00000149657.15	1179.04080	680.69970	0.79240	12.13890	10.65360	K562	SRSF1
LSM14B	ENSG00000149657.15	473.58250	927.85740	-0.97030	11.55320	9.84610	HepG2	EIF3D
LSM14B	ENSG00000149657.15	650.85240	999.03190	-0.61820	10.87860	9.69530	HepG2	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 105 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LSM14B is not available on ENCORE database.

33 RBPs can affect the splicing of LSM14B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	LSM14B	ENSG00000149657.15	chr20	+	60705274	60705352			60704840	60705008	60705585	60705747	-0.08400	0.00000	excluded	HepG2	U2AF1
SE	LSM14B	ENSG00000149657.15	chr20	+	60702640	60702757			60701395	60701495	60704840	60705008	0.36300	0.00002	included	HepG2	MATR3
SE	LSM14B	ENSG00000149657.15	chr20	+	60702640	60702757			60701359	60701495	60704840	60705008	-0.25300	0.00006	excluded	HepG2	DDX6
SE	LSM14B	ENSG00000149657.15	chr20	+	60702640	60702757			60701359	60701495	60705274	60705352	0.14500	0.00042	included	HepG2	LARP4
A3SS	LSM14B	ENSG00000149657.15	chr20	+	60705560	60705747			60705585	60705747	60705274	60705352	0.05700	0.00002	longer	K562	AQR
MXE	LSM14B	ENSG00000149657.15	chr20	+	60702640	60702757	60705274	60705352	60701359	60701495	60705585	60705747	-0.15100	0.00069	2included	K562	LARP4
MXE	LSM14B	ENSG00000149657.15	chr20	+	60701359	60701495	60702640	60702757	60699672	60699836	60704840	60705008	0.07700	0.00012	1included	HepG2	U2AF1
MXE	LSM14B	ENSG00000149657.15	chr20	+	60701281	60701495	60704840	60705008	60699672	60699836	60705274	60705352	0.12300	0.00000	1included	HepG2	U2AF1
MXE	LSM14B	ENSG00000149657.15	chr20	+	60701395	60701495	60704840	60705008	60699672	60699836	60705274	60705352	0.14700	0.00000	1included	HepG2	U2AF1
MXE	LSM14B	ENSG00000149657.15	chr20	+	60702640	60702757	60704840	60705008	60701359	60701495	60705274	60705352	-0.11900	0.00005	2included	HepG2	U2AF1

Showing 1 to 10 of 76 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LSM14B

General Information

Functions

Localization

Domains (AlphaFold: LSM14B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LSM14B is not avaliable on ENCORE database.

38 proteins are bound to LSM14B RNA:

eCLIP assay for LSM14B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LSM14B is not available on ENCORE database.

89 RBPs can affect the gene expression of LSM14B :

The Knockdown/knockout RNA-Seq assay for LSM14B is not available on ENCORE database.

33 RBPs can affect the splicing of LSM14B :

The Knockdown/knockout RNA-Seq assay for LSM14B is not avaliable on ENCORE database.