LRRC59

General Information

Gene Name : LRRC59
Gene ID : ENSG00000108829.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LRRC59)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LRRC59	ENSG00000108829.9	37.36	47.91	42.63	ENCSR000AEF
HepG2	LRRC59	ENSG00000108829.9	138.15	123.98	131.06	ENCSR985KAT
K562	LRRC59	ENSG00000108829.9	149.09	144.01	146.55	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LRRC59 is not avaliable on ENCORE database.

Proteins bound to RNA

LRRC59 RNA is bound by 39 proteins.

CanvasJS.com

eCLIP assay for LRRC59 is not avaliable on ENCORE database.

39 proteins are bound to LRRC59 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	48463542	48463558	-	intron-Distal	7.21638	89.31571	K562	TROVE2
chr17	48463506	48463542	-	intron-Distal	6.66807	83.79439	K562	TROVE2
chr17	48460050	48460135	-	3'-UTR,intron-Distal	6.16521	41.51548	K562	UPF1
chr17	48459781	48459806	-	3'-UTR,intron-Distal	3.96654	41.38918	K562	YBX3
chr17	48459822	48459841	-	3'-UTR,intron-Distal	3.77924	37.36470	K562	YBX3
chr17	48460060	48460110	-	3'-UTR,intron-Distal	7.12754	36.93418	K562	LIN28B
chr17	48459806	48459811	-	3'-UTR,intron-Distal	3.72544	33.85586	K562	YBX3
chr17	48459770	48459781	-	3'-UTR,intron-Distal	5.16704	33.70992	K562	YBX3
chr17	48459763	48459770	-	3'-UTR,intron-Distal	5.39787	32.98127	K562	YBX3
chr17	48470209	48470234	-	CDS,intron-Distal	3.47039	32.25923	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 158 entries

eCLIP assay for LRRC59 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LRRC59 is not available on ENCORE database.
109 RBPs can affect the levels of LRRC59.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LRRC59 is not available on ENCORE database.

109 RBPs can affect the gene expression of LRRC59 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LRRC59	ENSG00000108829.9	4235.67460	7755.00870	-0.87250	43.14100	41.30320	HepG2	ETF1
LRRC59	ENSG00000108829.9	1613.06070	4572.31280	-1.50310	36.04400	34.03120	HepG2	GPKOW
LRRC59	ENSG00000108829.9	2860.36850	5685.54170	-0.99110	35.02840	32.60320	HepG2	NOL12
LRRC59	ENSG00000108829.9	2525.68620	4109.73450	-0.70240	29.02120	27.04250	HepG2	DDX19B
LRRC59	ENSG00000108829.9	2464.82710	3813.39080	-0.62960	24.41800	22.78190	HepG2	ZC3H8
LRRC59	ENSG00000108829.9	4917.96670	7320.88340	-0.57400	22.68240	21.60840	HepG2	SRFBP1
LRRC59	ENSG00000108829.9	6534.74790	8784.28070	-0.42680	21.12510	19.34450	K562	NSUN2
LRRC59	ENSG00000108829.9	6875.22990	4941.80880	0.47630	19.93760	18.80010	HepG2	ZNF622
LRRC59	ENSG00000108829.9	1998.02630	3646.70610	-0.86800	17.34170	15.92620	HepG2	HNRNPU
LRRC59	ENSG00000108829.9	2067.20730	3670.96650	-0.82850	16.67020	15.10920	HepG2	HNRNPC
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 136 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LRRC59 is not available on ENCORE database.

1 RBPs can affect the splicing of LRRC59 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A3SS	LRRC59	ENSG00000108829.9	chr17	-	48470099	48470314			48470099	48470258	48472289	48472457	0.05200	0.00000	0.00000	longer	K562	AQR
A3SS	LRRC59	ENSG00000108829.9	chr17	-	48472289	48472457			48472289	48472349	48474573	48474914	0.06000	0.00000	0.00000	longer	K562	AQR

Showing 1 to 2 of 2 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LRRC59

General Information

Functions

Localization

Domains (AlphaFold: LRRC59)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LRRC59 is not avaliable on ENCORE database.

39 proteins are bound to LRRC59 RNA:

eCLIP assay for LRRC59 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LRRC59 is not available on ENCORE database.

109 RBPs can affect the gene expression of LRRC59 :

The Knockdown/knockout RNA-Seq assay for LRRC59 is not available on ENCORE database.

1 RBPs can affect the splicing of LRRC59 :

The Knockdown/knockout RNA-Seq assay for LRRC59 is not avaliable on ENCORE database.