KPNA3

General Information

Gene Name : KPNA3
Gene ID : ENSG00000102753.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: KPNA3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KPNA3	ENSG00000102753.9	40.41	34.35	37.38	ENCSR000AEF
HepG2	KPNA3	ENSG00000102753.9	22.27	38.53	30.40	ENCSR985KAT
K562	KPNA3	ENSG00000102753.9	14.23	15.73	14.98	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KPNA3 is not avaliable on ENCORE database.

Proteins bound to RNA

KPNA3 RNA is bound by 9 proteins.

CanvasJS.com

eCLIP assay for KPNA3 is not avaliable on ENCORE database.

9 proteins are bound to KPNA3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	50366484	50366586	-	CDS,intron-Distal	4.11009	10.32997	HepG2	PRPF8
chr13	50301170	50301250	-	intron-Distal	5.31164	6.93116	HepG2	QKI
chr13	50307107	50307183	-	CDS,intron-Distal,intron-Proximal	4.82118	6.29310	K562	ZNF622
chr13	50301164	50301291	-	intron-Distal	5.53927	6.23225	K562	QKI
chr13	50361134	50361197	-	intron-Distal	3.92490	5.64899	HepG2	PCBP2
chr13	50307094	50307162	-	CDS,intron-Distal	3.63543	5.56491	HepG2	BCLAF1
chr13	50287349	50287449	-	intron-Distal	4.19183	4.76003	K562	KHSRP
chr13	50359112	50359222	-	intron-Distal	3.30976	4.53157	HepG2	MATR3
chr13	50301250	50301295	-	intron-Distal	4.29480	4.51735	HepG2	QKI
chr13	50287618	50287678	-	intron-Distal	3.13251	4.10408	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 18 entries

eCLIP assay for KPNA3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for KPNA3 is not available on ENCORE database.
131 RBPs can affect the levels of KPNA3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for KPNA3 is not available on ENCORE database.

131 RBPs can affect the gene expression of KPNA3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KPNA3	ENSG00000102753.5	7741.77520	1215.53000	2.67100	99999.99999	99999.99999	HepG2	SRSF1
KPNA3	ENSG00000102753.5	3520.20010	1244.81430	1.49960	84.33080	82.40740	HepG2	NELFE
KPNA3	ENSG00000102753.5	2704.96840	1205.75580	1.16560	57.69590	55.81080	HepG2	ACO1
KPNA3	ENSG00000102753.5	1254.57240	2549.72240	-1.02310	38.10310	35.98000	HepG2	HNRNPF
KPNA3	ENSG00000102753.5	873.95060	1747.94710	-1.00000	36.88370	34.94390	HepG2	SLBP
KPNA3	ENSG00000102753.5	2155.14860	1126.27150	0.93610	32.62190	30.91540	HepG2	UTP3
KPNA3	ENSG00000102753.5	1343.78200	2504.95860	-0.89850	30.43740	28.62460	HepG2	SRSF7
KPNA3	ENSG00000102753.5	1199.40490	2510.76590	-1.06580	29.00420	26.96460	HepG2	IGF2BP1
KPNA3	ENSG00000102753.5	2435.36820	1093.14480	1.15560	27.19220	25.39280	HepG2	DDX21
KPNA3	ENSG00000102753.5	1679.68820	750.20730	1.16270	26.73280	25.14490	HepG2	RPS19
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 150 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KPNA3 is not available on ENCORE database.

2 RBPs can affect the splicing of KPNA3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	KPNA3	ENSG00000102753.5	chr13	-	50280403	50280534			50280403	50280508	50283707	50283836	0.11700	0.00001	0.00015	longer	K562	AQR
A3SS	KPNA3	ENSG00000102753.5	chr13	-	50280233	50280338			50280233	50280305	50280403	50280508	0.07500	0.00006	0.00848	longer	HepG2	RBM22
A3SS	KPNA3	ENSG00000102753.5	chr13	-	50283707	50283889			50283707	50283836	50285026	50285158	0.05100	0.00072	0.00518	longer	K562	AQR
MXE	KPNA3	ENSG00000102753.5	chr13	-	50280403	50280652	50283707	50283859	50280233	50280305	50285026	50285158	0.09900	0.00926	0.05947	1included	K562	AQR
A3SS	KPNA3	ENSG00000102753.5	chr13	-	50307092	50307224			50307092	50307182	50321084	50321129	0.05200	0.00934	0.04985	longer	K562	AQR

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KPNA3

General Information

Functions

Localization

Domains (AlphaFold: KPNA3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KPNA3 is not avaliable on ENCORE database.

9 proteins are bound to KPNA3 RNA:

eCLIP assay for KPNA3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for KPNA3 is not available on ENCORE database.

131 RBPs can affect the gene expression of KPNA3 :

The Knockdown/knockout RNA-Seq assay for KPNA3 is not available on ENCORE database.

2 RBPs can affect the splicing of KPNA3 :

The Knockdown/knockout RNA-Seq assay for KPNA3 is not avaliable on ENCORE database.