GSPT1

General Information

Gene Name : GSPT1
Gene ID : ENSG00000103342.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GSPT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GSPT1	ENSG00000103342.12	121.36	114.41	117.88	ENCSR000AEF
HepG2	GSPT1	ENSG00000103342.12	142.45	251.92	197.19	ENCSR985KAT
K562	GSPT1	ENSG00000103342.12	158.23	180.72	169.47	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GSPT1 is not avaliable on ENCORE database.

Proteins bound to RNA

GSPT1 RNA is bound by 43 proteins.

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eCLIP assay for GSPT1 is not avaliable on ENCORE database.

43 proteins are bound to GSPT1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	11966568	11966646	-	3'-UTR,intron-Distal	3.89516	59.67807	K562	FAM120A
chr16	11990496	11990592	-	CDS,intron-Distal	3.89173	44.87079	HepG2	BCLAF1
chr16	12007657	12007720	-	intron-Distal	5.66961	37.53978	HepG2	HNRNPM
chr16	11980335	11980469	-	CDS,intron-Distal,intron-Proximal	3.98996	36.73424	HepG2	BCLAF1
chr16	11990498	11990587	-	CDS,intron-Distal	3.57659	26.40501	K562	UCHL5
chr16	11990434	11990496	-	CDS,intron-Distal,intron-Proximal	3.94995	26.17524	HepG2	BCLAF1
chr16	11980724	11980763	-	CDS,intron-Distal,intron-Proximal	4.06491	25.56498	HepG2	BCLAF1
chr16	12009491	12009587	-	5'-UTR,CDS,intron-Distal	3.40125	25.24641	K562	GEMIN5
chr16	11980681	11980724	-	CDS,intron-Distal	4.70917	24.88719	HepG2	BCLAF1
chr16	12009401	12009493	-	CDS,intron-Distal	3.64862	23.38350	HepG2	RPS3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 146 entries

eCLIP assay for GSPT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GSPT1 is not available on ENCORE database.
104 RBPs can affect the levels of GSPT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GSPT1 is not available on ENCORE database.

104 RBPs can affect the gene expression of GSPT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GSPT1	ENSG00000103342.8	1351.64110	5297.80470	-1.97070	68.37040	65.55650	K562	HNRNPC
GSPT1	ENSG00000103342.8	2194.99000	6690.48740	-1.60790	62.91360	60.13740	HepG2	HNRNPC
GSPT1	ENSG00000103342.8	4082.49350	6646.26050	-0.70310	29.01680	27.23140	HepG2	HNRNPU
GSPT1	ENSG00000103342.8	8567.97530	5806.19650	0.56130	21.23240	19.96650	HepG2	SRSF9
GSPT1	ENSG00000103342.8	10269.32710	7136.87930	0.52490	20.13360	19.10500	HepG2	SRSF1
GSPT1	ENSG00000103342.8	6695.73220	9331.56210	-0.47890	19.49570	18.08370	HepG2	SUCLG1
GSPT1	ENSG00000103342.8	10162.42840	7159.85690	0.50510	18.86310	17.51420	HepG2	UTP3
GSPT1	ENSG00000103342.8	4866.07950	7373.66250	-0.59960	17.39590	15.81910	K562	EIF2S2
GSPT1	ENSG00000103342.8	5891.94330	7968.07510	-0.43550	16.47300	15.02230	HepG2	SLBP
GSPT1	ENSG00000103342.8	4314.38350	5905.04630	-0.45280	16.14390	14.69630	HepG2	DNAJC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 129 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GSPT1 is not available on ENCORE database.

11 RBPs can affect the splicing of GSPT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GSPT1	ENSG00000103342.8	chr16	-	11981426	11981639			11980633	11980788	11984918	11984996	-0.06100	0.00000	0.00000	excluded	HepG2	SF3A3
A3SS	GSPT1	ENSG00000103342.8	chr16	-	11969942	11970092			11969942	11970032	11971263	11971478	0.06200	0.00000	0.00000	longer	K562	AQR
A3SS	GSPT1	ENSG00000103342.8	chr16	-	11976871	11977107			11976871	11976952	11979037	11979277	0.06300	0.00000	0.00000	longer	K562	AQR
A3SS	GSPT1	ENSG00000103342.8	chr16	-	11981463	11981704			11981463	11981607	11984918	11984996	0.05600	0.00000	0.00000	longer	K562	AQR
A3SS	GSPT1	ENSG00000103342.8	chr16	-	11990414	11990642			11990414	11990639	11991696	11991738	-0.12800	0.00000	0.00009	shorter	HepG2	CDC40
MXE	GSPT1	ENSG00000103342.8	chr16	-	11988810	11988844	11990414	11990642	11984918	11984996	11991696	11991745	0.14100	0.00000	0.00002	1included	K562	PPIL4
MXE	GSPT1	ENSG00000103342.8	chr16	-	11988810	11988844	11990414	11990639	11984918	11984996	11991696	11991738	0.14400	0.00000	0.00022	1included	K562	PPIL4
MXE	GSPT1	ENSG00000103342.8	chr16	-	11988810	11988844	11990414	11990642	11984918	11984996	11991696	11991745	0.13700	0.00000	0.00050	1included	K562	DDX55
MXE	GSPT1	ENSG00000103342.8	chr16	-	11969942	11970032	11971263	11971437	11969617	11969786	11976871	11976952	-0.12700	0.00002	0.00705	2included	HepG2	XRCC6
MXE	GSPT1	ENSG00000103342.8	chr16	-	11969942	11970032	11971263	11971437	11969617	11969786	11976871	11976952	0.08500	0.00003	0.00624	1included	K562	HNRNPL

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GSPT1

General Information

Functions

Localization

Domains (AlphaFold: GSPT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GSPT1 is not avaliable on ENCORE database.

43 proteins are bound to GSPT1 RNA:

eCLIP assay for GSPT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GSPT1 is not available on ENCORE database.

104 RBPs can affect the gene expression of GSPT1 :

The Knockdown/knockout RNA-Seq assay for GSPT1 is not available on ENCORE database.

11 RBPs can affect the splicing of GSPT1 :

The Knockdown/knockout RNA-Seq assay for GSPT1 is not avaliable on ENCORE database.