CUL4A

General Information

Gene Name : CUL4A
Gene ID : ENSG00000139842.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CUL4A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CUL4A	ENSG00000139842.14	28.47	32.65	30.56	ENCSR000AEF
HepG2	CUL4A	ENSG00000139842.14	51.21	47.94	49.58	ENCSR985KAT
K562	CUL4A	ENSG00000139842.14	43.91	42.28	43.09	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CUL4A is not avaliable on ENCORE database.

Proteins bound to RNA

CUL4A RNA is bound by 45 proteins.

CanvasJS.com

eCLIP assay for CUL4A is not avaliable on ENCORE database.

45 proteins are bound to CUL4A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	113869366	113869443	+	intron-Distal	7.69154	113.76907	K562	EXOSC5
chr13	113870263	113870345	+	intron-Distal	6.87881	104.83866	K562	HNRNPM
chr13	113869294	113869366	+	intron-Distal	7.23851	77.15526	K562	EXOSC5
chr13	113870268	113870350	+	intron-Distal	6.29224	76.99455	HepG2	HNRNPM
chr13	113870005	113870085	+	intron-Distal	7.05303	75.91524	K562	HNRNPM
chr13	113870208	113870263	+	intron-Distal	7.08510	75.91524	K562	HNRNPM
chr13	113869862	113869933	+	intron-Distal	7.98054	72.71096	K562	HNRNPM
chr13	113869574	113869669	+	intron-Distal	6.28809	67.73762	K562	HNRNPM
chr13	113869695	113869769	+	intron-Distal	7.81192	64.40728	K562	HNRNPM
chr13	113869566	113869617	+	intron-Distal	6.36920	63.73657	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 265 entries

eCLIP assay for CUL4A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CUL4A is not available on ENCORE database.
96 RBPs can affect the levels of CUL4A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CUL4A is not available on ENCORE database.

96 RBPs can affect the gene expression of CUL4A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CUL4A	ENSG00000139842.10	2066.39380	3580.64970	-0.79310	27.83940	26.26590	HepG2	ETF1
CUL4A	ENSG00000139842.10	1739.83190	2934.76740	-0.75430	25.87630	24.66520	HepG2	SSB
CUL4A	ENSG00000139842.10	1363.05850	2273.64620	-0.73820	21.60300	20.16350	HepG2	UTP3
CUL4A	ENSG00000139842.10	1584.00960	2469.04770	-0.64040	21.65910	19.95100	HepG2	HNRNPL
CUL4A	ENSG00000139842.10	1445.51350	3028.98960	-1.06730	16.25270	15.07420	HepG2	AKAP1
CUL4A	ENSG00000139842.10	1755.24160	2787.76270	-0.66740	16.59450	14.73030	K562	SF3A3
CUL4A	ENSG00000139842.10	1001.05500	1791.71410	-0.83980	15.13020	13.81930	K562	HNRNPC
CUL4A	ENSG00000139842.10	1945.65020	2997.19860	-0.62340	15.01580	13.54410	K562	EIF2S2
CUL4A	ENSG00000139842.10	913.10390	1797.41750	-0.97710	15.62020	13.19370	K562	UCHL5
CUL4A	ENSG00000139842.10	1914.01080	2710.46450	-0.50190	14.16720	12.71110	HepG2	DAZAP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 119 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CUL4A is not available on ENCORE database.

10 RBPs can affect the splicing of CUL4A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CUL4A	ENSG00000139842.10	chr13	+	113900269	113900377			113899465	113899551	113907395	113907509	-0.13500	0.00000	0.00000	excluded	HepG2	U2AF1
SE	CUL4A	ENSG00000139842.10	chr13	+	113900269	113900377			113899465	113899551	113907395	113907509	-0.10600	0.00000	0.00000	excluded	K562	PUS1
SE	CUL4A	ENSG00000139842.10	chr13	+	113900269	113900377			113899465	113899551	113907395	113907509	-0.09300	0.00000	0.00003	excluded	K562	UTP18
SE	CUL4A	ENSG00000139842.10	chr13	+	113900269	113900377			113899465	113899551	113907395	113907509	-0.08400	0.00000	0.00005	excluded	K562	RBM15
A3SS	CUL4A	ENSG00000139842.10	chr13	+	113883759	113883987			113883907	113883987	113882289	113882359	-0.36500	0.00000	0.00013	shorter	HepG2	U2AF1
MXE	CUL4A	ENSG00000139842.10	chr13	+	113883759	113883833	113883907	113883987	113882289	113882359	113887490	113887653	-0.14100	0.00001	0.00055	2included	HepG2	U2AF1
SE	CUL4A	ENSG00000139842.10	chr13	+	113909006	113909112			113907395	113907509	113909266	113909439	-0.05400	0.00002	0.00142	excluded	HepG2	SF3A3
SE	CUL4A	ENSG00000139842.10	chr13	+	113909006	113909112			113907395	113907509	113909266	113909439	-0.08400	0.00002	0.00154	excluded	HepG2	SF3B4
SE	CUL4A	ENSG00000139842.10	chr13	+	113900269	113900377			113899465	113899551	113907395	113907509	0.05700	0.00004	0.02291	included	K562	PPIL4
RI	CUL4A	ENSG00000139842.10	chr13	+	113883759	113883987			113883759	113883833	113883955	113883987	0.18200	0.00005	0.00314	included	HepG2	MATR3

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CUL4A

General Information

Functions

Localization

Domains (AlphaFold: CUL4A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CUL4A is not avaliable on ENCORE database.

45 proteins are bound to CUL4A RNA:

eCLIP assay for CUL4A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CUL4A is not available on ENCORE database.

96 RBPs can affect the gene expression of CUL4A :

The Knockdown/knockout RNA-Seq assay for CUL4A is not available on ENCORE database.

10 RBPs can affect the splicing of CUL4A :

The Knockdown/knockout RNA-Seq assay for CUL4A is not avaliable on ENCORE database.