CTDSP2

General Information

Gene Name : CTDSP2
Gene ID : ENSG00000175215.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTDSP2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CTDSP2	ENSG00000175215.10	38.40	54.37	46.38	ENCSR000AEF
HepG2	CTDSP2	ENSG00000175215.10	71.01	47.20	59.11	ENCSR985KAT
K562	CTDSP2	ENSG00000175215.10	64.53	58.11	61.32	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTDSP2 is not avaliable on ENCORE database.

Proteins bound to RNA

CTDSP2 RNA is bound by 36 proteins.

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eCLIP assay for CTDSP2 is not avaliable on ENCORE database.

36 proteins are bound to CTDSP2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	58218402	58218425	-	intron-Distal,intron-Proximal	9.89134	211.35409	K562	DGCR8
chr12	58218389	58218439	-	intron-Distal,intron-Proximal	9.75374	208.04053	HepG2	DGCR8
chr12	58218425	58218433	-	intron-Distal,intron-Proximal	9.86358	207.80323	K562	DGCR8
chr12	58217077	58217174	-	3'-UTR,intron-Distal,intron-Proximal	5.09825	80.69737	K562	TARDBP
chr12	58217066	58217157	-	3'-UTR,intron-Distal,intron-Proximal	5.59404	76.30395	K562	UPF1
chr12	58218585	58218672	-	intron-Distal	6.32403	70.57432	K562	DROSHA
chr12	58218208	58218287	-	intron-Distal	6.92845	62.47947	HepG2	DGCR8
chr12	58218170	58218305	-	intron-Distal,intron-Proximal	6.79006	55.45364	K562	DROSHA
chr12	58218487	58218539	-	intron-Distal	7.50567	42.38283	HepG2	DGCR8
chr12	58218601	58218622	-	intron-Distal	5.78168	42.33800	HepG2	DGCR8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 136 entries

eCLIP assay for CTDSP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTDSP2 is not available on ENCORE database.
137 RBPs can affect the levels of CTDSP2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CTDSP2 is not available on ENCORE database.

137 RBPs can affect the gene expression of CTDSP2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTDSP2	ENSG00000175215.5	998.77340	2860.04640	-1.51780	111.28600	108.53080	HepG2	SMN1
CTDSP2	ENSG00000175215.5	1474.86840	4694.17430	-1.67030	100.09480	97.88450	HepG2	RBM22
CTDSP2	ENSG00000175215.5	890.89480	2641.88830	-1.56820	83.21610	80.32580	HepG2	PRPF4
CTDSP2	ENSG00000175215.5	1325.42600	3548.48760	-1.42070	72.35900	70.04240	HepG2	CELF1
CTDSP2	ENSG00000175215.5	1382.77850	3375.02810	-1.28730	66.69410	63.79140	HepG2	AKAP8L
CTDSP2	ENSG00000175215.5	2743.31920	5616.30480	-1.03370	54.45560	52.41510	HepG2	ETF1
CTDSP2	ENSG00000175215.5	2119.52080	4055.30670	-0.93610	49.18700	47.14440	HepG2	SUCLG1
CTDSP2	ENSG00000175215.5	2452.70070	5963.01980	-1.28170	49.11560	47.11650	HepG2	QKI
CTDSP2	ENSG00000175215.5	1057.12870	3315.17800	-1.64890	49.42430	46.38660	HepG2	RPS2
CTDSP2	ENSG00000175215.5	2825.07430	6127.24030	-1.11690	43.94040	42.36780	HepG2	NELFE
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 164 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTDSP2 is not available on ENCORE database.

9 RBPs can affect the splicing of CTDSP2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CTDSP2	ENSG00000175215.5	chr12	-	58218009	58218249			58218009	58218102	58220128	58220185	0.13600	0.00000	0.00000	longer	K562	AQR
SE	CTDSP2	ENSG00000175215.5	chr12	-	58220128	58220185			58218009	58218102	58220778	58220880	-0.07800	0.00001	0.00031	excluded	HepG2	U2AF1
A3SS	CTDSP2	ENSG00000175215.5	chr12	-	58217686	58217872			58217686	58217788	58218009	58218102	0.15600	0.00004	0.00180	longer	HepG2	U2AF2
MXE	CTDSP2	ENSG00000175215.5	chr12	-	58220128	58220185	58220778	58220906	58218009	58218102	58221334	58221373	0.10100	0.00010	0.00315	1included	HepG2	U2AF1
A3SS	CTDSP2	ENSG00000175215.5	chr12	-	58217660	58217872			58217660	58217788	58218009	58218102	0.07000	0.00011	0.01669	longer	K562	EFTUD2
A3SS	CTDSP2	ENSG00000175215.5	chr12	-	58217686	58217872			58217686	58217788	58218009	58218102	0.05200	0.00034	0.00262	longer	K562	AQR
MXE	CTDSP2	ENSG00000175215.5	chr12	-	58217660	58217788	58217811	58217872	58216965	58217510	58218009	58218102	0.06500	0.00035	0.06810	1included	K562	EIF4G2
SE	CTDSP2	ENSG00000175215.5	chr12	-	58220128	58220185			58218009	58218102	58220778	58220880	-0.07400	0.00072	0.01069	excluded	HepG2	U2AF2
MXE	CTDSP2	ENSG00000175215.5	chr12	-	58220128	58220185	58220778	58220880	58218009	58218102	58221316	58221373	0.07700	0.00081	0.02906	1included	K562	SBDS
MXE	CTDSP2	ENSG00000175215.5	chr12	-	58220128	58220185	58220778	58220906	58218009	58218102	58221334	58221373	0.10100	0.00085	0.00709	1included	HepG2	U2AF2

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTDSP2

General Information

Functions

Localization

Domains (AlphaFold: CTDSP2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTDSP2 is not avaliable on ENCORE database.

36 proteins are bound to CTDSP2 RNA:

eCLIP assay for CTDSP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTDSP2 is not available on ENCORE database.

137 RBPs can affect the gene expression of CTDSP2 :

The Knockdown/knockout RNA-Seq assay for CTDSP2 is not available on ENCORE database.

9 RBPs can affect the splicing of CTDSP2 :

The Knockdown/knockout RNA-Seq assay for CTDSP2 is not avaliable on ENCORE database.