CDCA2

General Information

Gene Name : CDCA2
Gene ID : ENSG00000184661.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CDCA2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CDCA2	ENSG00000184661.13	25.24	23.16	24.20	ENCSR000AEF
HepG2	CDCA2	ENSG00000184661.13	12.05	20.64	16.34	ENCSR985KAT
K562	CDCA2	ENSG00000184661.13	21.28	22.45	21.87	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CDCA2 is not avaliable on ENCORE database.

Proteins bound to RNA

CDCA2 RNA is bound by 22 proteins.

CanvasJS.com

eCLIP assay for CDCA2 is not avaliable on ENCORE database.

22 proteins are bound to CDCA2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	25316987	25317042	+	5'-UTR,intron-Proximal	5.67232	28.70535	K562	AQR
chr8	25332320	25332386	+	intron-Distal	6.36509	21.37639	K562	HNRNPM
chr8	25362633	25362687	+	intron-Distal	6.43823	13.55741	K562	PTBP1
chr8	25362612	25362688	+	intron-Distal	5.53983	11.94006	HepG2	PTBP1
chr8	25332267	25332320	+	intron-Distal	5.54800	11.07164	K562	HNRNPM
chr8	25317042	25317080	+	intron-Proximal	4.72908	10.81562	K562	AQR
chr8	25318081	25318116	+	intron-Proximal	4.49832	10.71730	K562	KHSRP
chr8	25337675	25337770	+	intron-Distal,intron-Proximal	4.46927	10.35163	K562	KHSRP
chr8	25316754	25316839	+	5'-UTR	3.99685	9.98860	K562	UCHL5
chr8	25332386	25332430	+	intron-Distal	5.08530	9.21686	K562	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 62 entries

eCLIP assay for CDCA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CDCA2 is not available on ENCORE database.
146 RBPs can affect the levels of CDCA2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CDCA2 is not available on ENCORE database.

146 RBPs can affect the gene expression of CDCA2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CDCA2	ENSG00000184661.9	55.51390	480.99860	-3.11510	54.86600	52.79960	HepG2	RPLP0
CDCA2	ENSG00000184661.9	59.95240	551.41630	-3.20130	54.59830	52.39560	HepG2	SUPV3L1
CDCA2	ENSG00000184661.9	33.85120	415.10440	-3.61620	53.25410	51.29680	HepG2	BOP1
CDCA2	ENSG00000184661.9	60.58860	363.56240	-2.58510	46.98330	45.44390	HepG2	ZNF622
CDCA2	ENSG00000184661.9	49.24580	344.38360	-2.80590	33.47210	31.56660	HepG2	EIF2S1
CDCA2	ENSG00000184661.9	69.19980	422.75070	-2.61100	33.40870	31.29290	HepG2	RRP9
CDCA2	ENSG00000184661.9	64.62030	440.46050	-2.76900	32.02260	30.65850	HepG2	TIAL1
CDCA2	ENSG00000184661.9	65.46240	323.92260	-2.30690	29.08930	27.45320	HepG2	RPS19
CDCA2	ENSG00000184661.9	75.17910	362.08580	-2.26790	26.82420	24.98450	HepG2	IGF2BP2
CDCA2	ENSG00000184661.9	101.95170	401.87900	-1.97890	24.69470	22.94880	HepG2	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 165 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CDCA2 is not available on ENCORE database.

14 RBPs can affect the splicing of CDCA2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	CDCA2	ENSG00000184661.9	chr8	+	25337408	25337640			25337428	25337640	25327363	25327496	0.09800	0.00000	0.00001	longer	K562	AQR
A3SS	CDCA2	ENSG00000184661.9	chr8	+	25319554	25319587			25319569	25319587	25317899	25318070	0.18900	0.00000	0.00000	longer	K562	AQR
RI	CDCA2	ENSG00000184661.9	chr8	+	25317755	25318070			25317755	25317816	25317899	25318070	0.20200	0.00000	0.00000	included	K562	PUS1
RI	CDCA2	ENSG00000184661.9	chr8	+	25317755	25318070			25317755	25317816	25317899	25318070	0.18400	0.00000	0.00000	included	K562	AKAP8L
MXE	CDCA2	ENSG00000184661.9	chr8	+	25343243	25343353	25344761	25344850	25341481	25341726	25346067	25346205	0.07600	0.00000	0.00002	1included	K562	AQR
SE	CDCA2	ENSG00000184661.9	chr8	+	25329628	25329700			25327411	25327496	25337428	25337640	0.15700	0.00001	0.00097	included	K562	PTBP1
MXE	CDCA2	ENSG00000184661.9	chr8	+	25319554	25319724	25323690	25323841	25317899	25318070	25325732	25325929	0.15400	0.00001	0.00013	1included	K562	AQR
SE	CDCA2	ENSG00000184661.9	chr8	+	25329628	25329700			25327411	25327496	25337428	25337640	0.10100	0.00002	0.00067	included	K562	HNRNPC
RI	CDCA2	ENSG00000184661.9	chr8	+	25317755	25318070			25317755	25317816	25317899	25318070	0.12400	0.00002	0.00049	included	K562	RBM15
RI	CDCA2	ENSG00000184661.9	chr8	+	25317755	25318070			25317755	25317816	25317899	25318070	0.09300	0.00004	0.00321	included	K562	HNRNPUL1

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CDCA2

General Information

Functions

Localization

Domains (AlphaFold: CDCA2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CDCA2 is not avaliable on ENCORE database.

22 proteins are bound to CDCA2 RNA:

eCLIP assay for CDCA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CDCA2 is not available on ENCORE database.

146 RBPs can affect the gene expression of CDCA2 :

The Knockdown/knockout RNA-Seq assay for CDCA2 is not available on ENCORE database.

14 RBPs can affect the splicing of CDCA2 :

The Knockdown/knockout RNA-Seq assay for CDCA2 is not avaliable on ENCORE database.