ARRDC4

General Information

Gene Name : ARRDC4
Gene ID : ENSG00000140450.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ARRDC4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ARRDC4	ENSG00000140450.8	0.00	0.05	0.03	ENCSR000AEF
HepG2	ARRDC4	ENSG00000140450.8	2.92	4.53	3.73	ENCSR985KAT
K562	ARRDC4	ENSG00000140450.8	11.19	10.02	10.61	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ARRDC4 is not avaliable on ENCORE database.

Proteins bound to RNA

ARRDC4 RNA is bound by 13 proteins.

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eCLIP assay for ARRDC4 is not avaliable on ENCORE database.

13 proteins are bound to ARRDC4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	98515049	98515101	+	3'-UTR	6.52728	25.28990	K562	LIN28B
chr15	98515591	98515642	+	3'-UTR	3.75929	12.28296	K562	PUM2
chr15	98504398	98504470	+	intron-Distal,intron-Proximal	5.26427	11.65116	K562	AQR
chr15	98509269	98509349	+	CDS,intron-Proximal	4.12140	7.79506	K562	AQR
chr15	98516259	98516325	+	3'-UTR	4.05422	7.13820	K562	UPF1
chr15	98514835	98514875	+	3'-UTR	4.56756	6.89197	K562	PUM2
chr15	98512609	98512682	+	intron-Proximal	5.26427	6.75320	K562	AQR
chr15	98509072	98509187	+	CDS,intron-Proximal	3.88791	6.67591	K562	SF3B4
chr15	98515328	98515401	+	3'-UTR	3.20753	5.90738	K562	UPF1
chr15	98509101	98509170	+	CDS,intron-Proximal	3.83614	5.83621	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 26 entries

eCLIP assay for ARRDC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ARRDC4 is not available on ENCORE database.
181 RBPs can affect the levels of ARRDC4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ARRDC4 is not available on ENCORE database.

181 RBPs can affect the gene expression of ARRDC4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ARRDC4	ENSG00000140450.7	1978.92690	421.64430	2.23050	156.18390	153.39040	HepG2	PUM1
ARRDC4	ENSG00000140450.7	1955.99680	315.10670	2.63390	100.51750	98.16220	HepG2	BOP1
ARRDC4	ENSG00000140450.7	2343.35440	593.85120	1.98030	97.69680	95.50000	HepG2	RBM22
ARRDC4	ENSG00000140450.7	2873.72320	1132.60800	1.34320	66.25540	63.53410	K562	DDX47
ARRDC4	ENSG00000140450.7	5344.16420	1943.80290	1.45900	61.89460	57.95120	K562	PUM1
ARRDC4	ENSG00000140450.7	54.92970	582.28840	-3.40610	55.90290	54.32470	HepG2	SSB
ARRDC4	ENSG00000140450.7	1408.66350	421.35250	1.74110	53.53870	50.95500	HepG2	PUM2
ARRDC4	ENSG00000140450.7	1820.93090	779.63790	1.22370	51.02210	48.38550	K562	WDR43
ARRDC4	ENSG00000140450.7	777.09590	245.99500	1.65940	46.87550	44.93380	HepG2	CKAP4
ARRDC4	ENSG00000140450.7	1627.14890	410.69380	1.98610	41.73050	38.71370	HepG2	UBE2L3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 240 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ARRDC4 is not available on ENCORE database.

5 RBPs can affect the splicing of ARRDC4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ARRDC4	ENSG00000140450.7	chr15	+	98508829	98508896	98503927	98504398	98509124	98509272	-0.18700	0.00000	0.00014	excluded	K562	PUS1
SE	ARRDC4	ENSG00000140450.7	chr15	+	98508829	98508896	98503927	98504398	98509124	98509272	0.08200	0.00088	0.05930	included	K562	HNRNPUL1
SE	ARRDC4	ENSG00000140450.7	chr15	+	98508829	98508896	98503927	98504398	98509124	98509272	-0.07600	0.00206	0.05461	excluded	K562	AKAP8L
SE	ARRDC4	ENSG00000140450.7	chr15	+	98508829	98508896	98503927	98504398	98509124	98509272	-0.07400	0.00228	0.05203	excluded	K562	AGGF1
SE	ARRDC4	ENSG00000140450.7	chr15	+	98511216	98511346	98509124	98509272	98512352	98512609	-0.09400	0.01273	0.09826	excluded	K562	AQR

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ARRDC4

General Information

Functions

Localization

Domains (AlphaFold: ARRDC4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ARRDC4 is not avaliable on ENCORE database.

13 proteins are bound to ARRDC4 RNA:

eCLIP assay for ARRDC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ARRDC4 is not available on ENCORE database.

181 RBPs can affect the gene expression of ARRDC4 :

The Knockdown/knockout RNA-Seq assay for ARRDC4 is not available on ENCORE database.

5 RBPs can affect the splicing of ARRDC4 :

The Knockdown/knockout RNA-Seq assay for ARRDC4 is not avaliable on ENCORE database.