ZCRB1

General Information

Gene Name : ZCRB1
Gene ID : ENSG00000139168.7
Essential Gene : No

Functions

Spliceosome
Viral RNA regulation

Localization

Not Available

Domains (AlphaFold: ZCRB1)

RRM
ZNF

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZCRB1	ENSG00000139168.7	102.59	86.63	94.61	ENCSR000AEF
HepG2	ZCRB1	ENSG00000139168.7	29.79	32.89	31.34	ENCSR985KAT
K562	ZCRB1	ENSG00000139168.7	55.55	68.27	61.91	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
RNA Bind-n-Seq	RBNS: ZCRB1	ENCSR205HMN	ZCRB1	cell-free sample	Released		ENCSR566CVD

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
ZCRB1	Ribo-STAMP-293T	shRNA			ZCRB1-BGRSLV05-55,ZCRB1-BGRSLV05-56	NT-BGRSLV05-1,NT-BGRSLV05-2	,	Submitted	ENCORE2

RNA Bind-n-Seqn

GeneName	gene_aliases	Status	Project	Note
ZCRB1	ZCRB1		Released	ENCODE3

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZCRB1 is not avaliable on ENCORE database.

The binding motifs of ZCRB1

Proteins bound to RNA

ZCRB1 RNA is bound by 10 proteins.

eCLIP assay for ZCRB1 is not avaliable on ENCORE database.

10 proteins are bound to ZCRB1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	42706654	42706727	-	3'-UTR,intron-Distal,intron-Proximal	3.81375	15.57217	K562	PABPC4
chr12	42706834	42706913	-	3'-UTR,CDS,intron-Distal	3.03870	9.94631	K562	AGGF1
chr12	42706836	42706979	-	3'-UTR,CDS,intron-Distal	4.52406	18.21824	HepG2	BCLAF1
chr12	42716219	42716249	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.09176	4.34307	K562	YBX3
chr12	42719748	42719825	-	5'-UTR,intron-Distal,intron-Proximal	3.13256	5.54400	K562	YBX3
chr12	42719795	42719869	-	5'-UTR,intron-Distal,intron-Proximal	3.44591	8.38234	K562	UCHL5
chr12	42719783	42719907	-	5'-UTR,intron-Distal,intron-Proximal	3.29921	3.24636	K562	DDX3X
chr12	42717819	42717884	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.31305	6.76685	K562	YBX3
chr12	42711153	42711227	-	CDS,intron-Distal	4.07061	6.22576	HepG2	BCLAF1
chr12	42706918	42706964	-	CDS,intron-Distal	5.08906	8.43384	K562	UCHL5
chr12	42707548	42707568	-	CDS,intron-Distal,intron-Proximal	4.71943	17.30951	K562	AGGF1
chr12	42707497	42707569	-	CDS,intron-Distal,intron-Proximal	3.97047	3.97535	K562	SRSF7
chr12	42707491	42707617	-	CDS,intron-Distal,intron-Proximal	3.47866	3.39008	HepG2	AQR
chr12	42707491	42707569	-	CDS,intron-Distal,intron-Proximal	3.21068	5.71123	K562	CPSF6
chr12	42707675	42707779	-	CDS,intron-Distal,intron-Proximal	4.07085	9.30287	K562	TRA2A
chr12	42707546	42707567	-	CDS,intron-Distal	5.19475	7.73487	HepG2	BCLAF1
chr12	42707491	42707567	-	CDS,intron-Distal,intron-Proximal	5.92788	14.30521	K562	TRA2A
chr12	42707675	42707696	-	CDS,intron-Distal,intron-Proximal	3.74810	7.25346	K562	UCHL5
chr12	42707675	42707708	-	CDS,intron-Distal,intron-Proximal	4.23350	3.83856	K562	CPSF6
chr12	42707708	42707778	-	CDS,intron-Distal	3.35496	3.65489	K562	CPSF6
chr12	42707675	42707710	-	CDS,intron-Distal,intron-Proximal	4.08243	9.71848	K562	AGGF1
chr12	42707675	42707686	-	CDS,intron-Distal,intron-Proximal	4.31936	3.38968	HepG2	BCLAF1
chr12	42711591	42711632	-	CDS,intron-Distal	4.75407	5.70640	HepG2	BCLAF1
chr12	42707506	42707569	-	CDS,intron-Distal,intron-Proximal	4.29439	4.87455	HepG2	AGGF1
chr12	42707491	42707546	-	CDS,intron-Distal,intron-Proximal	3.88979	10.98590	HepG2	BCLAF1
chr12	42707490	42707568	-	CDS,intron-Distal,intron-Proximal	5.06872	31.21217	K562	UCHL5
chr12	42706987	42707000	-	CDS,intron-Distal	3.64458	5.08388	K562	UCHL5
chr12	42707509	42707548	-	CDS,intron-Distal	4.33438	17.30120	K562	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for ZCRB1 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for ZCRB1 is not available on ENCORE database.
64 RBPs can affect the levels of ZCRB1.

The Knockdown/knockout RNA-Seq assay for ZCRB1 is not available on ENCORE database.

64 RBPs can affect the gene expression of ZCRB1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZCRB1	ENSG00000139168.3	1287.37800	769.66250	0.74200	6.84510	6.05000	HepG2	AKAP1
ZCRB1	ENSG00000139168.3	371.03530	505.89820	-0.44730	3.64850	2.78060	HepG2	AKAP8L
ZCRB1	ENSG00000139168.3	1173.10720	953.24710	0.29930	2.35870	1.64200	HepG2	CALR
ZCRB1	ENSG00000139168.3	329.49730	502.43690	-0.60870	2.88030	2.09900	HepG2	CNOT7
ZCRB1	ENSG00000139168.3	537.85130	359.55390	0.58090	2.93960	1.61270	HepG2	DDX27
ZCRB1	ENSG00000139168.3	941.22730	737.24470	0.35230	2.02220	1.47840	HepG2	DDX3X
ZCRB1	ENSG00000139168.3	822.32010	633.38790	0.37650	1.95700	1.42960	HepG2	DDX6
ZCRB1	ENSG00000139168.3	604.23440	481.74730	0.32670	2.36330	1.72970	HepG2	DKC1
ZCRB1	ENSG00000139168.3	511.21610	416.66870	0.29490	2.07870	1.49800	HepG2	DNAJC2
ZCRB1	ENSG00000139168.3	919.23910	655.10980	0.48860	2.64500	1.97170	HepG2	EIF4B
ZCRB1	ENSG00000139168.3	881.22450	641.23530	0.45860	5.02850	3.95560	HepG2	EIF4G1
ZCRB1	ENSG00000139168.3	1268.05850	961.48690	0.39920	2.69460	1.93520	HepG2	FIP1L1
ZCRB1	ENSG00000139168.3	688.70320	506.99640	0.44180	3.18440	2.34480	HepG2	FUBP3
ZCRB1	ENSG00000139168.3	406.67360	629.73080	-0.63090	4.55540	3.71000	HepG2	G3BP1
ZCRB1	ENSG00000139168.3	845.85830	1069.47520	-0.33840	1.95050	1.40690	HepG2	GPKOW
ZCRB1	ENSG00000139168.3	747.83390	592.15800	0.33660	3.00610	2.30700	HepG2	HNRNPL
ZCRB1	ENSG00000139168.3	647.85020	468.95900	0.46610	4.88390	4.09770	HepG2	HNRNPU
ZCRB1	ENSG00000139168.3	581.54060	827.12680	-0.50820	2.60710	1.90450	HepG2	IGF2BP1
ZCRB1	ENSG00000139168.3	290.43260	460.29260	-0.66430	7.17530	5.58730	HepG2	KIF1C
ZCRB1	ENSG00000139168.3	520.65540	398.49960	0.38570	2.40420	1.35050	HepG2	LARP7
ZCRB1	ENSG00000139168.3	839.98090	653.61610	0.36180	2.94100	1.68740	HepG2	NAA15
ZCRB1	ENSG00000139168.3	569.92750	417.84670	0.44770	3.45810	2.08350	HepG2	PKM
ZCRB1	ENSG00000139168.3	627.00240	418.27420	0.58390	6.21170	5.14080	HepG2	PPIL4
ZCRB1	ENSG00000139168.3	1010.12930	664.57190	0.60390	9.17770	7.88730	HepG2	PRPF4
ZCRB1	ENSG00000139168.3	442.86980	296.44310	0.57900	3.35950	2.47700	HepG2	PRPF8
ZCRB1	ENSG00000139168.3	917.29850	706.98780	0.37560	3.23480	2.56700	HepG2	QKI
ZCRB1	ENSG00000139168.3	884.85340	525.35170	0.75210	4.24790	3.38360	HepG2	RAVER1
ZCRB1	ENSG00000139168.3	993.13720	700.32100	0.50390	5.75490	5.07620	HepG2	RBM22
ZCRB1	ENSG00000139168.3	746.06200	516.05690	0.53170	2.77560	1.83020	HepG2	RPS10
ZCRB1	ENSG00000139168.3	662.70580	452.37030	0.55080	4.34690	2.98650	HepG2	RPS5
ZCRB1	ENSG00000139168.3	439.68930	293.24450	0.58430	3.16640	2.33310	HepG2	RRP9
ZCRB1	ENSG00000139168.3	706.48390	417.62980	0.75830	11.83580	10.64720	HepG2	SAFB2
ZCRB1	ENSG00000139168.3	1227.04740	826.69230	0.56970	3.30950	2.57030	HepG2	SF3A3
ZCRB1	ENSG00000139168.3	699.66880	487.02870	0.52260	6.42240	5.50750	HepG2	SMN1
ZCRB1	ENSG00000139168.3	576.84440	709.39670	-0.29840	2.20990	1.77440	HepG2	SRSF1
ZCRB1	ENSG00000139168.3	821.07130	686.76660	0.25760	2.10760	1.64400	HepG2	SSB
ZCRB1	ENSG00000139168.3	867.78730	649.51100	0.41790	3.77670	2.69140	HepG2	SUPT6H
ZCRB1	ENSG00000139168.3	713.09090	994.81080	-0.48030	4.01840	3.16450	HepG2	TARDBP
ZCRB1	ENSG00000139168.3	758.85140	459.75430	0.72290	11.01910	10.00600	HepG2	TRIM56
ZCRB1	ENSG00000139168.3	1333.48010	822.66820	0.69670	7.75760	6.71010	HepG2	U2AF1
ZCRB1	ENSG00000139168.3	314.94220	225.97910	0.47880	2.31340	1.61820	HepG2	UCHL5
ZCRB1	ENSG00000139168.3	401.72290	733.15090	-0.86790	14.71080	13.34330	HepG2	UPF1
ZCRB1	ENSG00000139168.3	516.27790	707.82660	-0.45520	4.60950	3.86840	HepG2	UTP3
ZCRB1	ENSG00000139168.3	777.40200	516.60670	0.58950	3.35810	1.95170	HepG2	XRCC5
ZCRB1	ENSG00000139168.3	932.28590	806.32400	0.20930	1.82240	1.35310	HepG2	ZNF622
ZCRB1	ENSG00000139168.3	736.73610	524.87250	0.48910	2.71920	1.43790	HepG2	ZRANB2
ZCRB1	ENSG00000139168.3	2544.87990	2076.37960	0.29340	4.41340	3.72620	K562	AGGF1
ZCRB1	ENSG00000139168.3	2655.31940	2266.97160	0.22800	2.43040	1.57890	K562	ATP5C1
ZCRB1	ENSG00000139168.3	2944.07330	2481.36920	0.24660	2.48250	1.37840	K562	CCDC124
ZCRB1	ENSG00000139168.3	1724.85140	2588.67490	-0.58570	3.49270	2.27600	K562	CNOT7
ZCRB1	ENSG00000139168.3	1788.50440	2265.30640	-0.34100	4.86270	3.37070	K562	CPEB4
ZCRB1	ENSG00000139168.3	830.53690	596.93590	0.47640	5.59600	3.71670	K562	DDX27
ZCRB1	ENSG00000139168.3	1499.63890	928.65130	0.69130	4.05850	3.16050	K562	G3BP2
ZCRB1	ENSG00000139168.3	540.35090	1073.02150	-0.98970	6.15240	5.29680	K562	HNRNPC
ZCRB1	ENSG00000139168.3	2659.26230	2194.87400	0.27680	2.55950	1.53890	K562	MAK16
ZCRB1	ENSG00000139168.3	1563.54550	1767.70380	-0.17710	1.99600	1.34990	K562	NSUN2
ZCRB1	ENSG00000139168.3	640.71410	444.74510	0.52660	3.54390	1.45440	K562	PES1
ZCRB1	ENSG00000139168.3	803.88500	456.79410	0.81530	8.51180	7.19250	K562	PRPF8
ZCRB1	ENSG00000139168.3	3069.65060	2142.65510	0.51860	6.05980	5.29430	K562	PUS1
ZCRB1	ENSG00000139168.3	821.44090	465.31350	0.81990	7.74590	6.36630	K562	RPS19
ZCRB1	ENSG00000139168.3	881.11220	467.07180	0.91560	8.05960	5.84700	K562	RRP9
ZCRB1	ENSG00000139168.3	611.77630	390.90070	0.64610	3.75630	1.90880	K562	SERBP1
ZCRB1	ENSG00000139168.3	1443.93920	1744.15430	-0.27250	2.95080	2.11110	K562	SF3A3
ZCRB1	ENSG00000139168.3	644.89220	456.11750	0.49960	3.66500	1.75130	K562	SRP68
ZCRB1	ENSG00000139168.3	1450.41930	1786.91300	-0.30100	3.94810	2.85040	K562	SRPK2
ZCRB1	ENSG00000139168.3	776.46660	1058.88210	-0.44750	4.28990	3.41470	K562	SRSF1
ZCRB1	ENSG00000139168.3	1004.05080	1241.53990	-0.30630	2.33670	1.38230	K562	SRSF4
ZCRB1	ENSG00000139168.3	674.75760	442.30630	0.60920	4.48860	3.16790	K562	SUPV3L1
ZCRB1	ENSG00000139168.3	1886.82540	1541.30980	0.29170	3.55010	2.10360	K562	TROVE2
ZCRB1	ENSG00000139168.3	1161.41650	900.30830	0.36730	2.29010	1.30810	K562	U2AF1
ZCRB1	ENSG00000139168.3	1365.18360	929.77560	0.55400	7.57300	6.24130	K562	U2AF2
ZCRB1	ENSG00000139168.3	681.03250	468.11130	0.54080	4.03700	2.78320	K562	UCHL5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZCRB1

General Information

Functions

Localization

Domains (AlphaFold: ZCRB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZCRB1 is not avaliable on ENCORE database.

10 proteins are bound to ZCRB1 RNA:

eCLIP assay for ZCRB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZCRB1 is not available on ENCORE database.

64 RBPs can affect the gene expression of ZCRB1 :

The Knockdown/knockout RNA-Seq assay for ZCRB1 is not available on ENCORE database.

No RBPs affect the alternative splcing events of ZCRB1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for ZCRB1 is not avaliable on ENCORE database.