RNF26

General Information

Gene Name : RNF26
Gene ID : ENSG00000173456.4
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF26)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF26	ENSG00000173456.4	6.54	12.73	9.63	ENCSR000AEF
HepG2	RNF26	ENSG00000173456.4	50.15	30.47	40.31	ENCSR985KAT
K562	RNF26	ENSG00000173456.4	35.23	26.57	30.90	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	RNF26-BGRSLV06-RS293		RNF26	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
RNF26	Ribo-STAMP-293T	shRNA			RNF26-BGRSLV06-31,RNF26-BGRSLV06-32	NT-BGRSLV06-1,NT-BGRSLV06-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF26 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF26 RNA is bound by 11 proteins.

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eCLIP assay for RNF26 is not avaliable on ENCORE database.

11 proteins are bound to RNF26 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	119205315	119205381	+	5'-UTR	5.74449	30.49862	HepG2	DDX3X
chr11	119205471	119205538	+	5'-UTR	5.01512	28.37973	HepG2	DDX3X
chr11	119205278	119205315	+	5'-UTR	7.31419	26.32935	HepG2	DDX3X
chr11	119205386	119205433	+	5'-UTR	6.78697	18.73760	HepG2	DDX3X
chr11	119205915	119205957	+	CDS	5.80571	17.66846	HepG2	DDX3X
chr11	119205764	119205863	+	5'-UTR,CDS	4.78831	15.33556	K562	IGF2BP1
chr11	119205635	119205752	+	5'-UTR	4.56005	13.25507	HepG2	PCBP2
chr11	119205846	119205900	+	CDS	5.93912	13.24386	HepG2	DDX3X
chr11	119205542	119205578	+	5'-UTR	6.44148	12.70669	HepG2	DDX3X
chr11	119207760	119207828	+	3'-UTR	3.75735	10.65182	K562	IGF2BP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 41 entries

eCLIP assay for RNF26 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RNF26 is not available on ENCORE database.
108 RBPs can affect the levels of RNF26.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNF26 is not available on ENCORE database.

108 RBPs can affect the gene expression of RNF26 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF26	ENSG00000173456.4	1078.36730	2397.28990	-1.15260	51.68630	50.23450	HepG2	SRFBP1
RNF26	ENSG00000173456.4	817.51420	1663.23420	-1.02470	34.34440	32.45450	HepG2	UPF1
RNF26	ENSG00000173456.4	1142.85570	2081.38830	-0.86490	28.15580	26.90670	HepG2	SSB
RNF26	ENSG00000173456.4	899.52640	2157.59540	-1.26220	28.20310	26.12770	HepG2	U2AF1
RNF26	ENSG00000173456.4	1089.81140	2122.51750	-0.96170	27.40830	26.11330	HepG2	RBM22
RNF26	ENSG00000173456.4	1009.33050	1662.10040	-0.71960	20.53620	19.09380	HepG2	CKAP4
RNF26	ENSG00000173456.4	849.62710	1472.15750	-0.79300	19.96660	18.73260	HepG2	SRSF9
RNF26	ENSG00000173456.4	611.78630	1198.23560	-0.96980	19.25520	18.15390	HepG2	TIAL1
RNF26	ENSG00000173456.4	1038.66970	1755.36550	-0.75700	17.97320	16.22930	HepG2	EIF4G1
RNF26	ENSG00000173456.4	1286.40350	2046.61090	-0.66990	16.38440	14.91980	K562	DDX47
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF26

General Information

Functions

Localization

Domains (AlphaFold: RNF26)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF26 is not avaliable on ENCORE database.

11 proteins are bound to RNF26 RNA:

eCLIP assay for RNF26 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF26 is not available on ENCORE database.

108 RBPs can affect the gene expression of RNF26 :

The Knockdown/knockout RNA-Seq assay for RNF26 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RNF26 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RNF26 is not avaliable on ENCORE database.