TRAPPC9

General Information

Gene Name : TRAPPC9
Gene ID : ENSG00000167632.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRAPPC9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRAPPC9	ENSG00000167632.15	8.79	7.79	8.29	ENCSR000AEF
HepG2	TRAPPC9	ENSG00000167632.15	3.90	3.40	3.65	ENCSR985KAT
K562	TRAPPC9	ENSG00000167632.15	5.45	6.41	5.93	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRAPPC9 is not avaliable on ENCORE database.

Proteins bound to RNA

TRAPPC9 RNA is bound by 36 proteins.

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eCLIP assay for TRAPPC9 is not avaliable on ENCORE database.

36 proteins are bound to TRAPPC9 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	140814982	140815119	-	intron-Distal	6.93372	90.28279	K562	AGGF1
chr8	140883952	140884085	-	intron-Distal	6.42389	57.12892	K562	AGGF1
chr8	140815119	140815239	-	intron-Distal	6.20642	53.87564	K562	AGGF1
chr8	140884085	140884160	-	intron-Distal	7.21967	38.12622	K562	AGGF1
chr8	140884449	140884528	-	intron-Distal	6.31487	37.13218	K562	AGGF1
chr8	140814897	140815140	-	intron-Distal	5.17486	35.78970	HepG2	HNRNPL
chr8	140815391	140815519	-	intron-Distal	5.59862	32.95921	K562	AGGF1
chr8	141282027	141282220	-	intron-Distal	5.61920	28.50617	K562	AGGF1
chr8	141204871	141204956	-	intron-Distal	6.69512	27.06850	K562	EXOSC5
chr8	141205497	141205573	-	intron-Distal	5.73673	27.02343	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 255 entries

eCLIP assay for TRAPPC9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRAPPC9 is not available on ENCORE database.
46 RBPs can affect the levels of TRAPPC9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TRAPPC9 is not available on ENCORE database.

46 RBPs can affect the gene expression of TRAPPC9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRAPPC9	ENSG00000167632.10	568.62920	261.60860	1.12000	10.91090	9.69390	HepG2	NCBP2
TRAPPC9	ENSG00000167632.10	255.22600	534.94580	-1.06760	10.05850	9.04620	K562	AQR
TRAPPC9	ENSG00000167632.10	594.51190	339.98820	0.80610	9.69810	8.47660	K562	EIF2S2
TRAPPC9	ENSG00000167632.10	448.25000	248.84250	0.84900	8.97220	8.09990	HepG2	PTBP1
TRAPPC9	ENSG00000167632.10	237.73500	433.33220	-0.86610	8.81000	7.80390	K562	FXR1
TRAPPC9	ENSG00000167632.10	392.06790	219.59760	0.83610	8.61260	7.58710	HepG2	HNRNPU
TRAPPC9	ENSG00000167632.10	481.64720	269.48700	0.83770	8.28190	7.28900	HepG2	QKI
TRAPPC9	ENSG00000167632.10	533.26600	275.87860	0.95070	8.17620	7.15200	HepG2	DDX3X
TRAPPC9	ENSG00000167632.10	84.60120	221.34080	-1.38750	8.09130	7.03160	HepG2	SUPV3L1
TRAPPC9	ENSG00000167632.10	460.13670	277.36900	0.73020	7.94990	6.86710	HepG2	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 51 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRAPPC9 is not available on ENCORE database.

1 RBPs can affect the splicing of TRAPPC9 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	TRAPPC9	ENSG00000167632.10	chr8	-	141436713	141436740			141415675	141415797	141445210	141445339	0.54100	0.00051	0.04274	included	HepG2	DDX3X

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRAPPC9

General Information

Functions

Localization

Domains (AlphaFold: TRAPPC9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRAPPC9 is not avaliable on ENCORE database.

36 proteins are bound to TRAPPC9 RNA:

eCLIP assay for TRAPPC9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRAPPC9 is not available on ENCORE database.

46 RBPs can affect the gene expression of TRAPPC9 :

The Knockdown/knockout RNA-Seq assay for TRAPPC9 is not available on ENCORE database.

1 RBPs can affect the splicing of TRAPPC9 :

The Knockdown/knockout RNA-Seq assay for TRAPPC9 is not avaliable on ENCORE database.