TAF13

General Information

Gene Name       : TAF13
Gene ID             : ENSG00000197780.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TAF13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TAF13ENSG00000197780.927.0420.8323.93ENCSR000AEF
HepG2TAF13ENSG00000197780.911.1527.7719.46ENCSR985KAT
K562TAF13ENSG00000197780.933.7438.7336.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TAF13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TAF13 RNA is bound by 7 proteins.  







eCLIP assay for TAF13 is not avaliable on ENCORE database.





7 proteins are bound to TAF13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1109606729109606783-3'-UTR,intron-Distal,intron-Proximal6.0040418.25838HepG2UPF1
chr1109607093109607137-3'-UTR,intron-Distal4.753558.44976K562PUM2
chr1109605513109605567-3'-UTR,intron-Distal5.5775611.25861K562UPF1
chr1109606705109606783-3'-UTR,intron-Distal,intron-Proximal3.2435221.69810K562UPF1
chr1109607033109607093-3'-UTR,intron-Distal,intron-Proximal5.8001018.53754K562PUM2
chr1109605368109605427-3'-UTR,intron-Distal4.158209.37691K562UPF1
chr1109618541109618588-5'-UTR,CDS,intron-Distal4.8247013.00315K562ZNF622
chr1109617613109617688-CDS,intron-Distal,intron-Proximal4.938026.46081K562TRA2A
chr1109608795109608846-CDS,intron-Distal4.3794012.39089K562ZNF622
chr1109608795109608854-CDS,intron-Distal4.9579114.94214K562UCHL5
chr1109617611109617671-CDS,intron-Distal4.4155915.77730K562UCHL5
chr1109617671109617687-CDS,intron-Distal3.492748.11704K562UCHL5
chr1109617663109617688-CDS,intron-Distal,intron-Proximal5.7293211.66235K562ZNF622
chr1109617612109617688-CDS,intron-Distal,intron-Proximal3.422864.65185K562SRSF1
chr1109608846109608854-CDS,intron-Distal4.284186.29174K562ZNF622
chr1109617614109617688-CDS,intron-Distal,intron-Proximal4.422463.80886HepG2TRA2A
chr1109617607109617663-CDS,intron-Distal,intron-Proximal4.7008713.72753K562ZNF622
chr1109606107109606162-intron-Distal4.730534.78313HepG2UPF1
chr1109606060109606108-intron-Distal3.044654.06711K562AKAP1
chr1109606066109606109-intron-Distal5.2131716.89434K562UPF1
chr1109606642109606729-intron-Distal,intron-Proximal5.3112617.63353HepG2UPF1
chr1109606648109606686-intron-Distal,intron-Proximal4.711479.04751K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TAF13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TAF13 is not available on ENCORE database.

  • 104 RBPs can affect the levels of TAF13.  








The Knockdown/knockout RNA-Seq assay for TAF13 is not available on ENCORE database.





104 RBPs can affect the gene expression of TAF13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TAF13ENSG00000197780.5520.60750247.656801.0718016.4809015.26080HepG2ACO1
TAF13ENSG00000197780.5672.60080361.413800.896007.419106.59240HepG2AKAP1
TAF13ENSG00000197780.5235.80420153.411200.620102.830401.78120HepG2AKAP8
TAF13ENSG00000197780.5421.73880299.054000.495802.635101.86900HepG2ASCC1
TAF13ENSG00000197780.5556.08760358.249200.634206.633405.64190HepG2AUH
TAF13ENSG00000197780.5435.06540278.345000.644303.743502.71080HepG2BCLAF1
TAF13ENSG00000197780.5314.85760209.795800.585603.185602.54880HepG2BOP1
TAF13ENSG00000197780.5408.72910151.604701.4307017.7171016.08080HepG2CALR
TAF13ENSG00000197780.5420.61910284.117200.565903.296502.45710HepG2CIRBP
TAF13ENSG00000197780.5170.93400247.63280-0.534803.023302.33510HepG2CKAP4
TAF13ENSG00000197780.5397.63350263.394200.594102.540501.80920HepG2CNOT7
TAF13ENSG00000197780.5109.33680192.60820-0.816903.524502.75770HepG2CPSF6
TAF13ENSG00000197780.570.01670197.86770-1.498809.764107.94640HepG2CSTF2
TAF13ENSG00000197780.5610.79740283.556001.107003.294102.60540HepG2CELF1
TAF13ENSG00000197780.5149.53150304.86820-1.027709.850308.59030HepG2DAZAP1
TAF13ENSG00000197780.5305.20490150.272701.022107.536206.47310HepG2DDX21
TAF13ENSG00000197780.5786.53560346.238001.1836014.6313013.30440HepG2DDX3X
TAF13ENSG00000197780.5200.88980314.95520-0.648702.960802.16540HepG2DDX55
TAF13ENSG00000197780.5225.39100141.471600.671803.232002.14690HepG2DDX5
TAF13ENSG00000197780.5489.12160297.352800.717904.735603.94700HepG2DDX6
TAF13ENSG00000197780.5191.69810126.139400.603702.143001.33160HepG2EEF2
TAF13ENSG00000197780.5192.68190105.180800.873204.209802.84000HepG2EFTUD2
TAF13ENSG00000197780.5229.79250138.298400.732403.224202.02020HepG2AGO1
TAF13ENSG00000197780.568.67360133.55590-0.959603.763502.40120HepG2EIF2S2
TAF13ENSG00000197780.5229.74800102.412001.165607.245605.84470HepG2EIF3D
TAF13ENSG00000197780.5450.79910316.015300.512402.509301.89930HepG2EIF4A3
TAF13ENSG00000197780.5126.26100307.61860-1.284708.018706.87780HepG2EIF4B
TAF13ENSG00000197780.5698.29700411.303200.7635010.593909.54120HepG2ETF1
TAF13ENSG00000197780.5491.04120242.031401.020504.661803.58310HepG2EWSR1
TAF13ENSG00000197780.5214.23530143.154300.581502.524501.42810HepG2FASTKD2
TAF13ENSG00000197780.5341.71220177.773600.942605.200004.17250HepG2FIP1L1
TAF13ENSG00000197780.5295.37350174.141600.762203.605501.81610HepG2GTF2F1
TAF13ENSG00000197780.5498.22050300.627100.728705.534504.60970HepG2IGF2BP2
TAF13ENSG00000197780.5158.90220226.40790-0.510802.683601.67770HepG2KIF1C
TAF13ENSG00000197780.5429.76400253.628200.760704.586903.50930HepG2LARP4
TAF13ENSG00000197780.5437.97850318.851300.457902.311401.71040HepG2MAGOH
TAF13ENSG00000197780.5615.04960328.220300.905908.106307.04870HepG2NCBP2
TAF13ENSG00000197780.5116.23540184.75360-0.668602.362101.66860HepG2NSUN2
TAF13ENSG00000197780.5579.84770240.684501.268409.582107.88980HepG2PABPC1
TAF13ENSG00000197780.5385.46820245.862100.648705.431304.62750HepG2PCBP1
TAF13ENSG00000197780.5388.49830174.816101.152008.424506.71400HepG2PCBP2
TAF13ENSG00000197780.593.29920165.45270-0.826502.934602.17790HepG2PPIL4
TAF13ENSG00000197780.5454.45490250.175600.861109.546008.65150HepG2PTBP1
TAF13ENSG00000197780.5169.88200270.94260-0.673503.831003.11230HepG2QKI
TAF13ENSG00000197780.5955.28370168.647802.5018023.7030021.84380HepG2RAVER1
TAF13ENSG00000197780.5968.05550343.776501.4935037.7378036.25360HepG2RBM22
TAF13ENSG00000197780.5445.03620245.899200.855807.787806.70680HepG2RBM25
TAF13ENSG00000197780.5364.88470278.420000.390102.066401.58440HepG2NELFE
TAF13ENSG00000197780.5443.28650289.532400.614404.147703.33880HepG2RPLP0
TAF13ENSG00000197780.5366.18680207.337000.820505.813204.67710HepG2RPS2
TAF13ENSG00000197780.5538.43290240.339701.1636010.742309.34850HepG2RRP9
TAF13ENSG00000197780.594.90030165.20420-0.799802.602301.97430HepG2SAFB2
TAF13ENSG00000197780.5104.53390275.25860-1.396804.152102.41510HepG2SF1
TAF13ENSG00000197780.5438.38260178.917901.2928011.6284010.18260HepG2SF3A3
TAF13ENSG00000197780.5411.33830206.254300.995808.746607.56010HepG2SF3B1
TAF13ENSG00000197780.5478.69160260.461900.877909.657508.65270HepG2SF3B4
TAF13ENSG00000197780.5171.38020276.72510-0.691304.594003.72540HepG2SLBP
TAF13ENSG00000197780.5111.39170192.67240-0.790502.993902.32820HepG2SMN1
TAF13ENSG00000197780.5312.09440172.245700.857405.065003.74000HepG2SMNDC1
TAF13ENSG00000197780.5373.62680229.491600.703102.952802.14380HepG2SNRNP70
TAF13ENSG00000197780.51439.76600388.288401.8905084.2529082.48120HepG2SRFBP1
TAF13ENSG00000197780.5807.65160271.867201.5707036.9582035.66400HepG2SRSF1
TAF13ENSG00000197780.5320.11320221.179500.533303.661003.04570HepG2SRSF9
TAF13ENSG00000197780.5374.48910229.860300.704104.102702.74040HepG2STIP1
TAF13ENSG00000197780.5194.12470324.05420-0.739305.696804.86350HepG2SUCLG1
TAF13ENSG00000197780.5685.14010313.533001.1277011.176709.96900HepG2SUPV3L1
TAF13ENSG00000197780.5347.21560210.150100.724303.703602.56940HepG2TFIP11
TAF13ENSG00000197780.5348.04370152.076101.194409.094507.94730HepG2U2AF1
TAF13ENSG00000197780.5466.98610298.447100.645803.501302.55540HepG2UBE2L3
TAF13ENSG00000197780.5225.27350158.672700.505502.516401.84450HepG2UPF1
TAF13ENSG00000197780.5299.43210153.192500.966808.024007.08970HepG2UTP3
TAF13ENSG00000197780.5218.70370308.63880-0.496902.060701.42690HepG2XRN2
TAF13ENSG00000197780.5314.63870174.509800.850307.821807.02320HepG2ZNF622
TAF13ENSG00000197780.5416.66750258.606900.688004.937003.29990K562AARS
TAF13ENSG00000197780.5801.32100585.379600.452903.614702.45340K562AKAP8
TAF13ENSG00000197780.5989.38140554.331700.8357011.182709.74840K562AKAP8L
TAF13ENSG00000197780.52392.425701051.965401.1853026.3304024.71900K562AQR
TAF13ENSG00000197780.568.40050135.74770-0.988904.174002.82190K562CCAR1
TAF13ENSG00000197780.51097.57820799.779800.456504.009902.45330K562CIRBP
TAF13ENSG00000197780.5372.49510584.05370-0.648906.205704.51370K562CPEB4
TAF13ENSG00000197780.5223.20010391.73060-0.811505.086003.58630K562CSTF2
TAF13ENSG00000197780.5661.55310465.516600.506903.911502.81070K562EFTUD2
TAF13ENSG00000197780.5362.56380631.46430-0.8005010.410509.15230K562EIF2S2
TAF13ENSG00000197780.5696.86100923.30520-0.405903.806902.70820K562EIF4G2
TAF13ENSG00000197780.5247.55240355.93840-0.523903.213801.83630K562EXOSC5
TAF13ENSG00000197780.5902.16100496.422300.861706.048705.20560K562FXR1
TAF13ENSG00000197780.5591.59810841.56550-0.508504.219203.28840K562GRSF1
TAF13ENSG00000197780.51160.13610745.334000.638206.279604.35870K562HNRNPK
TAF13ENSG00000197780.5659.79530395.470100.738406.067004.61680K562HNRNPM
TAF13ENSG00000197780.5582.96800758.93670-0.380602.759201.57050K562IGF2BP3
TAF13ENSG00000197780.5743.14370588.298800.337002.037301.33870K562KIF1C
TAF13ENSG00000197780.5187.92430287.00190-0.610902.966601.45530K562LIN28B
TAF13ENSG00000197780.5693.71880461.938900.586502.794401.90590K562NAA15
TAF13ENSG00000197780.5274.41970458.38690-0.740204.398202.65940K562NONO
TAF13ENSG00000197780.5355.65630448.79880-0.335602.190401.51930K562NSUN2
TAF13ENSG00000197780.51036.98520697.814600.571405.792504.36640K562PCBP2
TAF13ENSG00000197780.5188.62570276.33020-0.550902.754301.33820K562PHF6
TAF13ENSG00000197780.5421.64610545.81050-0.372402.093101.38360K562PPIG
TAF13ENSG00000197780.5947.90530452.998201.0651014.8041013.05520K562PRPF8
TAF13ENSG00000197780.51182.99420761.940500.634608.680007.54560K562PTBP1
TAF13ENSG00000197780.51747.641401007.396800.7947012.0905010.37150K562PUF60
TAF13ENSG00000197780.5771.446101049.88220-0.444604.813703.53470K562PUM2
TAF13ENSG00000197780.51154.85070549.774201.0707015.7436014.48770K562PUS1
TAF13ENSG00000197780.5898.61980561.080800.679403.930702.20200K562RAVER1
TAF13ENSG00000197780.5776.84620535.647900.536205.554104.73980K562RBM15
TAF13ENSG00000197780.5413.49340551.64000-0.415903.377401.62740K562RPS10
TAF13ENSG00000197780.5907.64200611.244600.570306.669905.30650K562SF3B4
TAF13ENSG00000197780.582.24300149.53360-0.862503.717402.23210K562SLBP
TAF13ENSG00000197780.5123.38870219.45240-0.830704.015002.70700K562SRFBP1
TAF13ENSG00000197780.51070.69350746.940900.519405.612704.61190K562SRSF1
TAF13ENSG00000197780.5193.54000314.44760-0.700204.116202.79770K562SRSF4
TAF13ENSG00000197780.5412.38500577.73680-0.486404.028602.44060K562SSB
TAF13ENSG00000197780.5511.20860878.96430-0.7819010.630208.02500K562SUCLG1
TAF13ENSG00000197780.5375.66320755.98490-1.0089012.8199011.09920K562TARDBP
TAF13ENSG00000197780.5495.01480729.22440-0.558905.359504.16460K562TIA1
TAF13ENSG00000197780.5105.57990244.11100-1.209207.739706.10490K562TIAL1
TAF13ENSG00000197780.5174.25190259.26850-0.573302.620801.70600K562TRIM56
TAF13ENSG00000197780.5873.83800569.743300.617004.900403.36050K562U2AF1
TAF13ENSG00000197780.5871.33890588.534600.566006.339905.13180K562U2AF2
TAF13ENSG00000197780.5309.54060437.47880-0.499102.781601.57610K562UTP3
TAF13ENSG00000197780.5634.262901185.17280-0.9019014.2828012.17190K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TAF13 is not available on ENCORE database.





12 RBPs can affect the splicing of TAF13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSTAF13ENSG00000197780.5chr1-109617608109617728109617608109617687109618542109618593-0.058000.003120.06535shorterHepG2U2AF2
A3SSTAF13ENSG00000197780.5chr1-1096087561096090031096087561096088541096176081096178230.070000.000000.00000longerK562AQR
MXETAF13ENSG00000197780.5chr1-109608756109608854109617608109617687109607054109607315109618542109618593-0.225000.000110.003392includedHepG2U2AF1
MXETAF13ENSG00000197780.5chr1-109608756109608854109617608109617687109607054109607315109618542109618593-0.100000.005940.061922includedK562DROSHA
MXETAF13ENSG00000197780.5chr1-109608756109608854109617608109617687109607054109607315109618542109618593-0.104000.002620.042732includedK562PUS1
MXETAF13ENSG00000197780.5chr1-1096087561096088541096176081096176871096070541096073151096185421096185930.208000.000070.005751includedK562LIN28B
MXETAF13ENSG00000197780.5chr1-1096087561096088541096176081096177281096070541096073151096185421096185930.072000.000000.000041includedK562AQR
MXETAF13ENSG00000197780.5chr1-1096087561096088541096176381096177281096070541096073151096185421096185930.062000.000000.000011includedK562AQR
MXETAF13ENSG00000197780.5chr1-1096087561096089101096176081096177281096067611096073151096185421096185930.075000.000000.000031includedK562AQR
MXETAF13ENSG00000197780.5chr1-1096087561096089101096176381096177281096067611096073151096185421096185930.064000.000000.000011includedK562AQR
MXETAF13ENSG00000197780.5chr1-1096087561096088711096176081096177281096067611096073151096185421096185930.075000.000000.000031includedK562AQR
MXETAF13ENSG00000197780.5chr1-1096087561096088711096176381096177281096067611096073151096185421096185930.064000.000000.000011includedK562AQR
MXETAF13ENSG00000197780.5chr1-109608756109608854109617608109617687109607054109607315109618542109618593-0.137000.000180.016522includedK562UTP18
MXETAF13ENSG00000197780.5chr1-109608756109608854109617608109617687109607054109607315109618542109618593-0.145000.000740.067922includedK562XRCC6
MXETAF13ENSG00000197780.5chr1-1096087561096088541096176081096176871096070541096073151096185421096185930.170000.005340.086361includedHepG2DDX55
MXETAF13ENSG00000197780.5chr1-109608756109608854109617608109617687109607054109607315109618542109618593-0.138000.000330.015602includedK562SBDS
MXETAF13ENSG00000197780.5chr1-1096087561096088541096176081096176871096070541096073151096185421096185930.164000.000790.031191includedHepG2SUPV3L1
MXETAF13ENSG00000197780.5chr1-109608756109608854109617608109617687109607054109607315109618542109618593-0.256000.000030.009212includedHepG2SUB1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TAF13 is not avaliable on ENCORE database.