SSBP1

General Information

Gene Name : SSBP1
Gene ID : ENSG00000106028.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SSBP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SSBP1	ENSG00000106028.10	392.24	317.91	355.08	ENCSR000AEF
HepG2	SSBP1	ENSG00000106028.10	140.38	234.07	187.22	ENCSR985KAT
K562	SSBP1	ENSG00000106028.10	597.06	693.32	645.19	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SSBP1 is not avaliable on ENCORE database.

Proteins bound to RNA

SSBP1 RNA is bound by 33 proteins.

CanvasJS.com

eCLIP assay for SSBP1 is not avaliable on ENCORE database.

33 proteins are bound to SSBP1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	141484358	141484444	+	intron-Distal	6.07363	52.43944	HepG2	QKI
chr7	141484258	141484352	+	intron-Distal	7.30454	42.50053	HepG2	QKI
chr7	141438163	141438211	+	5'-UTR,intron-Proximal	3.92376	35.29722	K562	DDX3X
chr7	141450141	141450185	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.13949	28.36206	K562	PABPC4
chr7	141484285	141484427	+	intron-Distal	6.73051	27.17961	K562	QKI
chr7	141438923	141438954	+	5'-UTR,intron-Proximal	3.07180	26.49869	K562	DDX3X
chr7	141450276	141450356	+	intron-Distal,intron-Proximal	4.84604	21.75703	K562	CSTF2T
chr7	141478547	141478627	+	CDS,intron-Distal	5.41340	20.72821	HepG2	SUGP2
chr7	141438249	141438328	+	5'-UTR,intron-Distal,intron-Proximal	3.13979	18.92122	K562	DDX3X
chr7	141450273	141450337	+	intron-Distal,intron-Proximal	5.46246	17.28659	K562	FMR1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 138 entries

eCLIP assay for SSBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SSBP1 is not available on ENCORE database.
102 RBPs can affect the levels of SSBP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SSBP1 is not available on ENCORE database.

102 RBPs can affect the gene expression of SSBP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SSBP1	ENSG00000106028.6	2704.59720	4579.56930	-0.75980	31.19450	29.09000	K562	UPF1
SSBP1	ENSG00000106028.6	1496.43670	3299.02780	-1.14050	30.25960	28.36650	K562	HNRNPC
SSBP1	ENSG00000106028.6	2851.32850	4319.04460	-0.59910	29.46500	27.45140	K562	NSUN2
SSBP1	ENSG00000106028.6	1157.56580	690.86080	0.74450	14.48220	13.27290	HepG2	UTP3
SSBP1	ENSG00000106028.6	2926.63590	4261.69600	-0.54220	13.27040	11.59740	K562	SF3A3
SSBP1	ENSG00000106028.6	2799.55230	3943.98230	-0.49450	13.39470	11.24260	K562	BCLAF1
SSBP1	ENSG00000106028.6	6474.89380	8901.41350	-0.45920	11.12030	9.18670	K562	PUM2
SSBP1	ENSG00000106028.6	3354.57340	4366.19070	-0.38020	10.15730	8.48930	K562	SRPK2
SSBP1	ENSG00000106028.6	4131.92840	2993.59500	0.46480	9.29960	8.26550	K562	FXR1
SSBP1	ENSG00000106028.6	3502.44640	5272.08060	-0.59000	9.41620	8.20810	K562	EIF2S2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 130 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SSBP1 is not available on ENCORE database.

3 RBPs can affect the splicing of SSBP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	SSBP1	ENSG00000106028.6	chr7	+	141438157	141438400			141438157	141438303	141438923	141438990	0.09900	0.00009	0.02348	longer	K562	HNRNPU
SE	SSBP1	ENSG00000106028.6	chr7	+	141438620	141438798			141438358	141438375	141438923	141438944	0.06500	0.00194	0.02134	included	K562	AQR
RI	SSBP1	ENSG00000106028.6	chr7	+	141438923	141439556			141438923	141438990	141439486	141439556	0.17300	0.00274	0.01845	included	K562	PUS1
MXE	SSBP1	ENSG00000106028.6	chr7	+	141438358	141438375	141438588	141438744	141438199	141438210	141438923	141438990	-0.17400	0.00347	0.02644	2included	K562	AQR
RI	SSBP1	ENSG00000106028.6	chr7	+	141438790	141438990			141438790	141438798	141438923	141438990	0.38900	0.00537	0.03067	included	K562	AQR
MXE	SSBP1	ENSG00000106028.6	chr7	+	141438358	141438375	141438588	141438798	141438199	141438210	141438923	141438990	-0.25800	0.00702	0.04758	2included	K562	AQR

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SSBP1

General Information

Functions

Localization

Domains (AlphaFold: SSBP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SSBP1 is not avaliable on ENCORE database.

33 proteins are bound to SSBP1 RNA:

eCLIP assay for SSBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SSBP1 is not available on ENCORE database.

102 RBPs can affect the gene expression of SSBP1 :

The Knockdown/knockout RNA-Seq assay for SSBP1 is not available on ENCORE database.

3 RBPs can affect the splicing of SSBP1 :

The Knockdown/knockout RNA-Seq assay for SSBP1 is not avaliable on ENCORE database.