SPATA2

General Information

Gene Name       : SPATA2
Gene ID             : ENSG00000158480.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SPATA2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SPATA2ENSG00000158480.102.903.903.40ENCSR000AEF
HepG2SPATA2ENSG00000158480.1010.556.688.62ENCSR985KAT
K562SPATA2ENSG00000158480.104.813.374.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SPATA2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SPATA2 RNA is bound by 6 proteins.  







eCLIP assay for SPATA2 is not avaliable on ENCORE database.





6 proteins are bound to SPATA2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr204852122448521356-3'-UTR,intron-Distal4.113845.03362HepG2CSTF2
chr204852012748520213-3'-UTR,intron-Distal5.249328.32953HepG2QKI
chr204853187348531957-5'-UTR,intron-Distal5.438588.04585HepG2PRPF8
chr204853191148531969-5'-UTR,intron-Distal5.028934.97000K562DDX3X
chr204853196348532019-5'-UTR,intron-Distal4.627466.75419HepG2DDX3X
chr204852306448523153-CDS,intron-Distal4.337594.15208K562RBM15
chr204852422648524355-intron-Distal4.297604.13881HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SPATA2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SPATA2 is not available on ENCORE database.

  • 111 RBPs can affect the levels of SPATA2.  








The Knockdown/knockout RNA-Seq assay for SPATA2 is not available on ENCORE database.





111 RBPs can affect the gene expression of SPATA2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SPATA2ENSG00000158480.6374.87520271.599800.464802.468301.45240HepG2AATF
SPATA2ENSG00000158480.6362.47780610.28840-0.751609.782708.62390HepG2AUH
SPATA2ENSG00000158480.61064.91000690.857400.624206.771505.88320HepG2BOP1
SPATA2ENSG00000158480.6736.36890486.072900.599205.284303.61000HepG2BUD13
SPATA2ENSG00000158480.6600.04570426.520000.492403.050602.24080HepG2CIRBP
SPATA2ENSG00000158480.6653.09720425.048600.619608.160407.13580HepG2CKAP4
SPATA2ENSG00000158480.6507.96880345.514900.555902.468201.75050HepG2CNOT7
SPATA2ENSG00000158480.6668.65310470.268800.507705.583004.73040HepG2CELF1
SPATA2ENSG00000158480.6635.65450505.546000.330303.133702.35190HepG2DAZAP1
SPATA2ENSG00000158480.6532.00550393.208700.436004.119103.12450HepG2DDX19B
SPATA2ENSG00000158480.6561.94870317.062900.825609.608007.65740HepG2DDX1
SPATA2ENSG00000158480.6670.49340299.488401.1626015.7886014.32720HepG2DDX21
SPATA2ENSG00000158480.61240.01370519.724901.2544019.4638017.96580HepG2DDX3X
SPATA2ENSG00000158480.6450.58470276.761100.703105.673203.81670HepG2DDX52
SPATA2ENSG00000158480.61025.87370720.240900.510202.324901.43130HepG2DDX59
SPATA2ENSG00000158480.6744.17350446.533700.736805.864804.99530HepG2DDX6
SPATA2ENSG00000158480.6426.76670310.897500.456903.179002.42990HepG2DNAJC21
SPATA2ENSG00000158480.6480.42210308.155500.640507.200706.21760HepG2DNAJC2
SPATA2ENSG00000158480.6491.70910275.209100.837206.935605.18300HepG2EFTUD2
SPATA2ENSG00000158480.6731.90070429.185000.769906.922506.01390HepG2EIF2S1
SPATA2ENSG00000158480.6656.63590268.002401.2927015.1924013.27790HepG2EIF3D
SPATA2ENSG00000158480.6834.97480461.833100.854306.558905.53150HepG2EIF4B
SPATA2ENSG00000158480.61049.26050700.747400.582308.077107.14290HepG2ETF1
SPATA2ENSG00000158480.6722.57710415.441400.798409.503807.98030HepG2EWSR1
SPATA2ENSG00000158480.6331.26210239.572300.467402.615001.48060HepG2FAM120A
SPATA2ENSG00000158480.6994.96360635.319300.647102.387601.45070HepG2FTO
SPATA2ENSG00000158480.6283.63590371.73680-0.390202.046201.36170HepG2FUBP3
SPATA2ENSG00000158480.6479.44770312.630300.616803.300702.07810HepG2FUS
SPATA2ENSG00000158480.6758.08580478.625500.663405.558704.60070HepG2FXR1
SPATA2ENSG00000158480.6669.26290443.934700.592104.183403.37430HepG2G3BP1
SPATA2ENSG00000158480.6351.01940471.37280-0.425302.184201.39810HepG2G3BP2
SPATA2ENSG00000158480.6391.96050238.614800.715904.810603.62970HepG2GEMIN5
SPATA2ENSG00000158480.6817.46760405.898501.0099020.8772018.64140HepG2HDGF
SPATA2ENSG00000158480.6493.42360292.240000.755604.757602.91870HepG2HNRNPA0
SPATA2ENSG00000158480.6596.93640313.876100.927309.787608.68210HepG2HNRNPA1
SPATA2ENSG00000158480.6447.99360285.368900.650603.841802.18140HepG2HNRNPAB
SPATA2ENSG00000158480.6633.04330349.130200.858408.614907.44310HepG2HNRNPC
SPATA2ENSG00000158480.6512.98160299.288700.777305.234103.14520HepG2HNRNPD
SPATA2ENSG00000158480.6622.66430498.326500.321302.391201.72110HepG2HNRNPF
SPATA2ENSG00000158480.61223.85500686.162600.8347010.483809.35370HepG2HNRNPLL
SPATA2ENSG00000158480.6607.43270451.994300.426302.811101.85250HepG2HNRNPM
SPATA2ENSG00000158480.6536.97100346.821800.630506.861505.94550HepG2HNRNPU
SPATA2ENSG00000158480.61222.61400451.228401.4379025.8958024.08570HepG2IGF2BP2
SPATA2ENSG00000158480.6514.73150354.266900.538905.861804.83100HepG2ILF2
SPATA2ENSG00000158480.6485.27680329.299500.559303.111001.83050HepG2KHDRBS1
SPATA2ENSG00000158480.6496.35910388.641100.352802.704801.69470HepG2KIF1C
SPATA2ENSG00000158480.6763.85550548.354700.478102.600901.39820HepG2KRR1
SPATA2ENSG00000158480.61511.01800754.803601.0012011.555509.86130HepG2LARP4
SPATA2ENSG00000158480.6451.01080299.292500.591503.799302.46790HepG2LARP7
SPATA2ENSG00000158480.6694.67950478.793100.536803.711102.95140HepG2MAGOH
SPATA2ENSG00000158480.6540.61690280.472600.946604.415003.10350HepG2METAP2
SPATA2ENSG00000158480.61098.59920530.165701.0510017.3489015.53200HepG2MSI2
SPATA2ENSG00000158480.61274.46370492.779801.3708022.3552020.66530HepG2NCBP2
SPATA2ENSG00000158480.6627.50210345.723100.859903.727902.44430HepG2NONO
SPATA2ENSG00000158480.6843.60040634.315900.411302.977401.31160HepG2NUP35
SPATA2ENSG00000158480.6746.09060315.823401.240109.940508.22330HepG2PABPC1
SPATA2ENSG00000158480.6729.35780438.782600.733006.447905.35750HepG2PABPC4
SPATA2ENSG00000158480.6843.48770401.105001.0723022.5943021.13620HepG2PCBP1
SPATA2ENSG00000158480.6332.36200221.635400.584503.640202.22700HepG2PKM
SPATA2ENSG00000158480.6809.13400408.155900.9872018.1450016.97540HepG2PTBP1
SPATA2ENSG00000158480.6709.94870478.568700.568905.452104.65090HepG2PUF60
SPATA2ENSG00000158480.6898.00230508.057000.8216018.2849017.03290HepG2PUM1
SPATA2ENSG00000158480.6799.83840507.664100.655707.669906.57670HepG2PUM2
SPATA2ENSG00000158480.6799.16210433.060200.8838016.5716015.28920HepG2PUS1
SPATA2ENSG00000158480.6779.47480442.007600.8183011.078309.94880HepG2QKI
SPATA2ENSG00000158480.6432.50070285.478000.599202.345301.69270HepG2RAVER1
SPATA2ENSG00000158480.6943.45680698.007800.434603.880102.88370HepG2RBM15
SPATA2ENSG00000158480.61060.94020585.683800.8570014.8927013.88560HepG2RBM22
SPATA2ENSG00000158480.6804.72910401.163701.0042014.8180013.32480HepG2RBM25
SPATA2ENSG00000158480.6505.57730293.073700.786605.415503.92620HepG2RCC2
SPATA2ENSG00000158480.6618.10420454.224600.444303.739803.12870HepG2NELFE
SPATA2ENSG00000158480.6433.20200260.801200.732005.756204.90710HepG2RPS19
SPATA2ENSG00000158480.6539.39940332.836200.696404.981703.92810HepG2RPS2
SPATA2ENSG00000158480.6466.07500308.859600.593505.701604.82920HepG2SAFB2
SPATA2ENSG00000158480.6362.48450261.718100.469802.186501.34590HepG2SERBP1
SPATA2ENSG00000158480.61613.66640571.867001.4965022.7106020.72020HepG2SF3A3
SPATA2ENSG00000158480.61195.12800679.183900.8152010.944309.62760HepG2SF3B1
SPATA2ENSG00000158480.6709.19500424.913300.738909.815308.80230HepG2SF3B4
SPATA2ENSG00000158480.6633.29740291.569401.1189010.607208.65790HepG2SMNDC1
SPATA2ENSG00000158480.6571.14710243.209901.231604.490002.73850HepG2SNRNP200
SPATA2ENSG00000158480.6621.04780443.529600.485604.504203.93720HepG2SRSF1
SPATA2ENSG00000158480.6432.55260301.892200.518702.661601.58470HepG2STIP1
SPATA2ENSG00000158480.6976.16940537.393800.8611019.1919017.78980HepG2SUCLG1
SPATA2ENSG00000158480.6573.62060442.327400.374902.139301.30670HepG2SUPT6H
SPATA2ENSG00000158480.6210.91390398.69540-0.918608.894907.98170HepG2TAF15
SPATA2ENSG00000158480.61313.61650668.711200.9740015.3233013.84630HepG2TARDBP
SPATA2ENSG00000158480.6573.66930366.311000.647105.891804.68280HepG2TIA1
SPATA2ENSG00000158480.6580.39470336.998200.784208.305807.52380HepG2TIAL1
SPATA2ENSG00000158480.6602.18750340.015000.8245011.8540010.80390HepG2TRIM56
SPATA2ENSG00000158480.6634.56510467.598900.440403.510102.51390HepG2TUFM
SPATA2ENSG00000158480.61173.52260560.426701.0661015.4597013.92830HepG2U2AF1
SPATA2ENSG00000158480.61097.20260283.046601.954609.526707.58080HepG2U2AF2
SPATA2ENSG00000158480.6882.96460507.158000.7998014.8576013.48720HepG2UPF1
SPATA2ENSG00000158480.6666.00060521.291800.353302.866601.80260HepG2UTP18
SPATA2ENSG00000158480.61107.11080489.642001.1769014.3061013.10600HepG2UTP3
SPATA2ENSG00000158480.61578.03660557.777601.5003072.2408070.43150HepG2ZNF622
SPATA2ENSG00000158480.6505.48580399.932300.337801.914701.36710K562AKAP8L
SPATA2ENSG00000158480.62282.57130383.345702.5738052.2596050.00880K562AQR
SPATA2ENSG00000158480.6309.81620226.696000.450602.334001.38050K562DDX3X
SPATA2ENSG00000158480.6580.92490430.323100.432803.795602.74680K562DKC1
SPATA2ENSG00000158480.6481.39590247.802300.957907.617205.76130K562EIF3D
SPATA2ENSG00000158480.6317.49100236.835200.422702.015801.31250K562EIF4A3
SPATA2ENSG00000158480.6300.40360213.277100.494102.942001.74150K562EIF4B
SPATA2ENSG00000158480.6651.68730498.122000.387602.924901.95940K562EIF4G2
SPATA2ENSG00000158480.6356.00680246.297600.531403.453202.78830K562FXR1
SPATA2ENSG00000158480.688.29190140.73410-0.672602.113201.50700K562G3BP2
SPATA2ENSG00000158480.6353.64640177.032100.998206.866304.96180K562IGF2BP2
SPATA2ENSG00000158480.6262.93430186.089600.498602.598701.78300K562MAGOH
SPATA2ENSG00000158480.6613.95590475.448800.368702.794201.87990K562MBNL1
SPATA2ENSG00000158480.6427.13170291.621300.550503.020502.10370K562METAP2
SPATA2ENSG00000158480.6416.97030241.271900.789202.799101.80260K562PABPN1
SPATA2ENSG00000158480.6280.39370181.885100.624303.489501.96510K562PCBP1
SPATA2ENSG00000158480.6271.19880165.580200.711704.060802.86940K562PCBP2
SPATA2ENSG00000158480.6355.26550225.246700.657303.663302.80020K562PRPF8
SPATA2ENSG00000158480.6262.97510180.795000.540502.925702.24510K562PTBP1
SPATA2ENSG00000158480.6786.99030543.480600.534004.305403.29330K562PUF60
SPATA2ENSG00000158480.6763.34000578.134400.400803.150102.00840K562PUM1
SPATA2ENSG00000158480.6554.17260396.585900.482603.363802.77370K562PUS1
SPATA2ENSG00000158480.6326.40680173.380400.912607.261105.81790K562RBM22
SPATA2ENSG00000158480.6379.20200209.432700.856404.974003.64190K562RCC2
SPATA2ENSG00000158480.6421.86830220.570400.935503.021901.74610K562SF1
SPATA2ENSG00000158480.6244.98720146.314800.743504.638703.52050K562SF3B4
SPATA2ENSG00000158480.6548.27720268.784601.028404.063502.36440K562SFPQ
SPATA2ENSG00000158480.6286.76000198.530500.530402.436201.48860K562SRFBP1
SPATA2ENSG00000158480.6595.42150439.313800.438603.516802.47730K562SRPK2
SPATA2ENSG00000158480.6355.24360177.235401.003008.661907.41570K562SRSF1
SPATA2ENSG00000158480.6247.65530167.375500.565102.788801.73550K562SRSF5
SPATA2ENSG00000158480.6280.74460179.382400.646103.539102.73610K562TARDBP
SPATA2ENSG00000158480.6247.74030173.032300.517702.472001.70440K562TIA1
SPATA2ENSG00000158480.6261.27390169.775700.621803.147001.97040K562TRA2A
SPATA2ENSG00000158480.6324.97670234.549400.470302.354601.49330K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SPATA2 is not available on ENCORE database.





1 RBPs can affect the splicing of SPATA2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESPATA2ENSG00000158480.6chr20-4852469148525129485199274852338248531916485320450.122000.008300.07006includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SPATA2 is not avaliable on ENCORE database.