SLC1A4

General Information

Gene Name       : SLC1A4
Gene ID             : ENSG00000115902.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC1A4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC1A4ENSG00000115902.1017.3118.6317.97ENCSR000AEF
HepG2SLC1A4ENSG00000115902.1036.1625.2830.72ENCSR985KAT
K562SLC1A4ENSG00000115902.1012.9711.0412.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC1A4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC1A4 RNA is bound by 13 proteins.  







eCLIP assay for SLC1A4 is not avaliable on ENCORE database.





13 proteins are bound to SLC1A4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr26525005565250117+3'-UTR4.149564.63912HepG2LIN28B
chr26524888065248985+3'-UTR3.769538.42654HepG2UPF1
chr26524903565249128+3'-UTR3.490426.10115HepG2IGF2BP1
chr26524958065249667+3'-UTR3.761503.02250K562YBX3
chr26524912865249177+3'-UTR4.274704.23131HepG2IGF2BP1
chr26524826565248366+3'-UTR,CDS4.6228013.92483HepG2RPS3
chr26524865565248756+3'-UTR3.107124.88659HepG2LIN28B
chr26524866065248712+3'-UTR3.740413.06853K562LIN28B
chr26524903965249091+3'-UTR4.606566.23064HepG2UPF1
chr26524878965248880+3'-UTR5.3154910.35090HepG2UPF1
chr26525005465250117+3'-UTR4.070753.90287K562LIN28B
chr26524837165248445+3'-UTR3.229143.44343HepG2AKAP1
chr26524969165249735+3'-UTR4.171143.31330K562UPF1
chr26524986965249942+3'-UTR4.276494.49605HepG2UPF1
chr26524837565248452+3'-UTR4.960246.71037HepG2UPF1
chr26524836565248458+3'-UTR4.152776.88182HepG2LARP4
chr26524828665248352+3'-UTR4.336283.92497HepG2UPF1
chr26521652465216613+5'-UTR,intron-Distal3.7430426.65290HepG2DDX3X
chr26521703065217133+CDS,intron-Distal3.7463615.08054HepG2RPS3
chr26521680965216869+CDS,intron-Distal3.497405.44438HepG2DDX3X
chr26524357165243645+CDS,intron-Distal,intron-Proximal3.162923.44907HepG2LIN28B
chr26524804465248063+CDS,intron-Proximal3.491496.16530HepG2SND1
chr26521713365217181+CDS,intron-Distal4.337594.15208K562RBM15
chr26521704765217195+CDS,intron-Distal3.604755.13799K562SND1
chr26524806365248113+CDS4.2219310.37257HepG2SND1
chr26524579665245815+CDS,intron-Proximal3.744668.69441HepG2SND1
chr26524814565248211+CDS5.498847.96752HepG2RPS3
chr26521713465217190+CDS,intron-Distal5.2660513.41311HepG2SND1
chr26521680865216854+CDS,intron-Distal4.337594.15208K562RBM15
chr26521689665216994+CDS,intron-Distal4.8293715.58419HepG2RPS3
chr26524813465248255+CDS4.5578813.49153HepG2SND1
chr26524527365245328+CDS4.086493.60906K562SND1
chr26521704465217088+CDS,intron-Distal4.032685.23222HepG2SND1
chr26521691065216976+CDS,intron-Distal3.963589.09300HepG2DDX3X
chr26524368965243804+CDS,intron-Distal3.964643.89948K562YBX3
chr26524375365243808+CDS,intron-Distal,intron-Proximal5.511779.43050HepG2SND1
chr26521709565217134+CDS,intron-Distal4.262486.35450HepG2SND1
chr26523785065237891+CDS3.435973.30795HepG2SND1
chr26524568565245747+CDS4.293449.49432HepG2SND1
chr26524378865243847+CDS,intron-Distal,intron-Proximal3.288004.79866HepG2PRPF8
chr26521680965216896+CDS,intron-Distal3.4952517.25704HepG2RPS3
chr26524574465245814+CDS,intron-Proximal3.350683.49838K562SND1
chr26521719065217282+CDS,intron-Distal4.1960016.06542HepG2SND1
chr26524574765245796+CDS4.4869512.40291HepG2SND1
chr26524520465245220+CDS,intron-Proximal3.509923.03966HepG2SND1
chr26524527465245375+CDS3.1621011.55683HepG2SND1
chr26523986965239904+intron-Distal3.334913.47114HepG2UPF1
chr26523990465239941+intron-Distal3.900925.87389HepG2UPF1
chr26521857965218663+intron-Distal3.147543.85440HepG2HNRNPC
chr26524506865245134+intron-Distal,intron-Proximal4.151573.35169HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC1A4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC1A4 is not available on ENCORE database.

  • 133 RBPs can affect the levels of SLC1A4.  








The Knockdown/knockout RNA-Seq assay for SLC1A4 is not available on ENCORE database.





133 RBPs can affect the gene expression of SLC1A4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC1A4ENSG00000115902.61959.83090829.731001.2399053.8882052.04180HepG2ACO1
SLC1A4ENSG00000115902.61410.09650800.077000.8175011.100409.28510HepG2ADAR
SLC1A4ENSG00000115902.61380.13380960.096900.523504.283902.99820HepG2AKAP8
SLC1A4ENSG00000115902.61236.93050833.509700.569409.593908.27180HepG2AKAP8L
SLC1A4ENSG00000115902.61165.541701669.79450-0.518709.802208.64080HepG2AUH
SLC1A4ENSG00000115902.6382.132401134.83000-1.5703033.5793031.89900HepG2BOP1
SLC1A4ENSG00000115902.62474.27290903.780401.4529034.2701032.04230HepG2CIRBP
SLC1A4ENSG00000115902.6533.94180911.22850-0.771102.206201.52880HepG2CNOT7
SLC1A4ENSG00000115902.61473.34800855.773000.783707.732205.97800HepG2CPSF7
SLC1A4ENSG00000115902.62470.759401183.114001.0623028.8964027.27950HepG2CELF1
SLC1A4ENSG00000115902.6956.050201272.05020-0.412006.239405.19020HepG2DAZAP1
SLC1A4ENSG00000115902.6970.97370754.816500.363202.842201.91470HepG2DDX24
SLC1A4ENSG00000115902.6574.61180802.55710-0.482003.562101.97920HepG2DDX28
SLC1A4ENSG00000115902.61494.944901101.320000.440803.413202.72700HepG2DDX3X
SLC1A4ENSG00000115902.6777.41280523.011700.571705.451103.62330HepG2DDX52
SLC1A4ENSG00000115902.62838.475901183.073501.262505.466804.10840HepG2DDX59
SLC1A4ENSG00000115902.62452.42960946.071501.3741025.2035023.61510HepG2DDX6
SLC1A4ENSG00000115902.6596.49890777.02940-0.381402.688001.71830HepG2DHX30
SLC1A4ENSG00000115902.61029.31530793.790500.374804.062203.27220HepG2DKC1
SLC1A4ENSG00000115902.61010.37150623.919500.695406.663305.29340HepG2EEF2
SLC1A4ENSG00000115902.6721.67710520.037200.472603.077901.91250HepG2EFTUD2
SLC1A4ENSG00000115902.6986.64460710.329900.473902.833101.71320HepG2AGO1
SLC1A4ENSG00000115902.61200.09930909.466800.400002.800202.20290HepG2EIF2S1
SLC1A4ENSG00000115902.61765.67200788.216901.1635029.0825026.11640HepG2EIF2S2
SLC1A4ENSG00000115902.61416.844601005.060600.495303.756403.01600HepG2EIF4A3
SLC1A4ENSG00000115902.62094.62980978.581101.0978013.0681011.63660HepG2EIF4B
SLC1A4ENSG00000115902.61004.665601255.03130-0.321003.319602.41770HepG2EIF4G1
SLC1A4ENSG00000115902.64630.662201917.269601.2721071.4480069.18810HepG2ETF1
SLC1A4ENSG00000115902.6322.79150452.73150-0.488103.147801.88890HepG2FAM120A
SLC1A4ENSG00000115902.6411.443501043.63160-1.342807.976206.26060HepG2FTO
SLC1A4ENSG00000115902.61281.46550935.546000.453802.558401.48440HepG2FUS
SLC1A4ENSG00000115902.61439.755101014.085600.505504.381403.52530HepG2FXR1
SLC1A4ENSG00000115902.6638.18550940.70170-0.559804.331703.50770HepG2G3BP1
SLC1A4ENSG00000115902.61668.88610998.690300.740709.133907.50430HepG2G3BP2
SLC1A4ENSG00000115902.61007.87150450.891601.1604017.1939015.16620HepG2GEMIN5
SLC1A4ENSG00000115902.61177.73870770.141700.612703.664502.07420HepG2HNRNPA0
SLC1A4ENSG00000115902.61136.60630813.337400.482704.536303.73630HepG2HNRNPA1
SLC1A4ENSG00000115902.61146.12290752.095500.607704.596402.77120HepG2HNRNPAB
SLC1A4ENSG00000115902.6564.25830904.70260-0.681107.123106.05050HepG2HNRNPC
SLC1A4ENSG00000115902.61083.553801313.43360-0.277602.933302.19610HepG2HNRNPF
SLC1A4ENSG00000115902.61429.033201158.713800.302404.374603.54120HepG2HNRNPL
SLC1A4ENSG00000115902.6859.577301127.01960-0.390802.758802.13000HepG2HNRNPLL
SLC1A4ENSG00000115902.61075.61360723.916600.571205.228403.96670HepG2HNRNPM
SLC1A4ENSG00000115902.6532.13620898.72010-0.7561013.2563012.00590HepG2HNRNPU
SLC1A4ENSG00000115902.61411.433401045.371800.433002.734601.51620HepG2HSPD1
SLC1A4ENSG00000115902.61384.17060956.198700.533504.779703.91420HepG2IGF2BP2
SLC1A4ENSG00000115902.62073.709801389.399200.577704.574503.49790HepG2LARP4
SLC1A4ENSG00000115902.61851.696201014.439700.8681011.7493010.43040HepG2MAGOH
SLC1A4ENSG00000115902.61785.470401020.113900.807509.196808.10080HepG2MATR3
SLC1A4ENSG00000115902.61086.15370849.273100.354802.937702.10510HepG2MSI2
SLC1A4ENSG00000115902.6721.899701149.46970-0.671104.276103.05760HepG2MTPAP
SLC1A4ENSG00000115902.61527.15310990.622200.624304.546202.71680HepG2NKRF
SLC1A4ENSG00000115902.6772.52420999.33710-0.371402.584701.86060HepG2NSUN2
SLC1A4ENSG00000115902.61384.18140910.083300.604906.950704.54530HepG2NUP35
SLC1A4ENSG00000115902.61234.70200832.738900.568102.445801.62120HepG2PABPC1
SLC1A4ENSG00000115902.61804.103701069.982400.7536019.1671017.80320HepG2PCBP1
SLC1A4ENSG00000115902.61198.67020817.083400.552803.000601.41670HepG2PNPT1
SLC1A4ENSG00000115902.6612.433201181.60480-0.9481022.7442020.90580HepG2PRPF4
SLC1A4ENSG00000115902.61135.84040817.198400.474903.378602.49380HepG2PRPF8
SLC1A4ENSG00000115902.61374.577501088.714400.336304.044503.41060HepG2PTBP1
SLC1A4ENSG00000115902.61903.990601278.243900.5748016.1547014.96400HepG2PUM1
SLC1A4ENSG00000115902.61604.15750845.113800.9245028.7778027.17990HepG2PUS1
SLC1A4ENSG00000115902.6877.954201179.17430-0.425604.715603.93190HepG2QKI
SLC1A4ENSG00000115902.61776.57080854.532301.055808.678207.47360HepG2RAVER1
SLC1A4ENSG00000115902.61154.768101602.45710-0.472706.892206.16120HepG2RBM22
SLC1A4ENSG00000115902.61665.652401070.150200.638204.573703.72380HepG2RBM25
SLC1A4ENSG00000115902.61475.837501211.661800.284402.891902.34110HepG2NELFE
SLC1A4ENSG00000115902.6940.888901414.91980-0.588606.898605.89160HepG2RPLP0
SLC1A4ENSG00000115902.6622.11290492.833000.336001.970201.44380HepG2RPS19
SLC1A4ENSG00000115902.6608.71230951.00060-0.643702.241001.51660HepG2RPS2
SLC1A4ENSG00000115902.6632.43640800.34110-0.339703.333802.63760HepG2SAFB2
SLC1A4ENSG00000115902.61567.38750707.233801.148003.976902.28130HepG2SF1
SLC1A4ENSG00000115902.62089.25440978.740901.0939013.6233012.06170HepG2SF3A3
SLC1A4ENSG00000115902.61787.341701133.550900.6569014.3034013.12060HepG2SF3B4
SLC1A4ENSG00000115902.61473.36070686.311901.102103.414301.76600HepG2SFPQ
SLC1A4ENSG00000115902.6974.463601154.61180-0.244702.354501.69960HepG2SLBP
SLC1A4ENSG00000115902.61318.74800933.317900.498609.559508.47760HepG2SMN1
SLC1A4ENSG00000115902.61561.569901183.157800.400305.626005.01130HepG2SRSF1
SLC1A4ENSG00000115902.6824.668501188.91690-0.527807.870106.88540HepG2SRSF5
SLC1A4ENSG00000115902.61111.904301290.41200-0.214801.946001.35130HepG2SRSF7
SLC1A4ENSG00000115902.61755.49430962.541300.8669026.2798024.90480HepG2SRSF9
SLC1A4ENSG00000115902.61142.68880795.497900.522403.529302.27240HepG2STIP1
SLC1A4ENSG00000115902.61147.08410798.606100.522303.056101.78940HepG2SUB1
SLC1A4ENSG00000115902.61438.760101054.479000.448202.753101.43110HepG2SUGP2
SLC1A4ENSG00000115902.6974.89770708.578800.460202.619701.70380HepG2SUPT6H
SLC1A4ENSG00000115902.62087.771201054.745600.9850013.0255011.74000HepG2SUPV3L1
SLC1A4ENSG00000115902.61425.540701063.401900.422705.239004.50880HepG2TAF15
SLC1A4ENSG00000115902.6610.025701098.56340-0.8487011.109309.80240HepG2TARDBP
SLC1A4ENSG00000115902.6728.20660977.19200-0.424304.159803.14330HepG2TIA1
SLC1A4ENSG00000115902.6425.14830873.21770-1.0384018.2880017.21100HepG2TIAL1
SLC1A4ENSG00000115902.61276.04570881.084700.534204.542303.85600HepG2TRIM56
SLC1A4ENSG00000115902.62405.86990897.455901.4225035.8569033.54580HepG2U2AF1
SLC1A4ENSG00000115902.62384.01370735.232101.697008.005006.24210HepG2U2AF2
SLC1A4ENSG00000115902.6696.70770965.68280-0.471002.771201.76670HepG2UPF2
SLC1A4ENSG00000115902.61624.302501166.125200.478009.355308.24180HepG2ZC3H8
SLC1A4ENSG00000115902.61618.36080954.625700.7614019.9287018.79150HepG2ZNF622
SLC1A4ENSG00000115902.6619.958401857.03700-1.5828018.9204017.55840K562AGGF1
SLC1A4ENSG00000115902.61471.662902040.37590-0.471402.198801.33350K562AKAP8
SLC1A4ENSG00000115902.6522.554601932.27530-1.8866029.4593026.93040K562AKAP8L
SLC1A4ENSG00000115902.6987.405902027.31640-1.0379014.3778012.10440K562ATP5C1
SLC1A4ENSG00000115902.6502.78450661.87290-0.396603.348902.12230K562CPEB4
SLC1A4ENSG00000115902.6667.88320478.538500.480903.861702.93520K562CPSF6
SLC1A4ENSG00000115902.61503.290602178.80840-0.535404.812302.85540K562DDX19B
SLC1A4ENSG00000115902.6351.08110477.18540-0.442703.620002.08170K562DDX27
SLC1A4ENSG00000115902.6496.87550685.06640-0.463404.306003.51860K562DDX47
SLC1A4ENSG00000115902.61344.685502079.61690-0.629005.312504.04560K562DKC1
SLC1A4ENSG00000115902.6224.62570357.10390-0.668803.426401.92070K562DNAJC21
SLC1A4ENSG00000115902.6384.94210507.41220-0.398502.245901.42380K562EFTUD2
SLC1A4ENSG00000115902.62639.20540716.824601.8803097.1561094.48540K562EIF2S2
SLC1A4ENSG00000115902.6277.63160543.24210-0.968408.365106.40680K562EIF3D
SLC1A4ENSG00000115902.6259.60760778.71910-1.5848035.3455032.55290K562EIF3G
SLC1A4ENSG00000115902.6198.80200362.60990-0.867103.869601.48650K562EIF4G1
SLC1A4ENSG00000115902.6715.67240486.892400.555604.331803.26170K562FMR1
SLC1A4ENSG00000115902.6331.94680635.20090-0.936307.451404.98920K562G3BP1
SLC1A4ENSG00000115902.6767.75050607.509800.337602.459001.44750K562HNRNPA1
SLC1A4ENSG00000115902.6472.755401592.77580-1.7524010.727307.77420K562HNRNPA2B1
SLC1A4ENSG00000115902.6578.34650423.380400.449903.037402.41480K562HNRNPC
SLC1A4ENSG00000115902.62450.03130893.766801.4547038.0413035.58290K562HSPD1
SLC1A4ENSG00000115902.6491.76710675.96550-0.459003.539402.15230K562IGF2BP3
SLC1A4ENSG00000115902.6740.195602050.82280-1.4702011.891909.78920K562KIF1C
SLC1A4ENSG00000115902.6577.56360410.057100.494103.524301.90870K562LARP7
SLC1A4ENSG00000115902.61107.733401962.98330-0.825404.415302.96570K562MAK16
SLC1A4ENSG00000115902.61033.36660696.763500.568505.662304.27960K562MATR3
SLC1A4ENSG00000115902.61690.722402297.41230-0.442402.180101.38910K562MBNL1
SLC1A4ENSG00000115902.6581.984301610.30240-1.468306.814005.20220K562NAA15
SLC1A4ENSG00000115902.6426.054801393.97250-1.710107.872405.89960K562PABPN1
SLC1A4ENSG00000115902.6310.65400621.19030-0.9997011.545009.46270K562PCBP2
SLC1A4ENSG00000115902.61614.54750955.115300.7573014.0086011.43700K562PNPT1
SLC1A4ENSG00000115902.6795.21870625.896600.345302.480801.72460K562POLR2G
SLC1A4ENSG00000115902.6858.036001658.01020-0.950304.017102.14170K562PPP1R8
SLC1A4ENSG00000115902.6312.18060493.77160-0.661504.598303.63240K562PRPF8
SLC1A4ENSG00000115902.6493.30840379.611200.377902.199701.40110K562PSIP1
SLC1A4ENSG00000115902.6423.71260678.40590-0.679107.094206.06750K562PTBP1
SLC1A4ENSG00000115902.6326.006701916.68650-2.5556040.5059038.37270K562PUS1
SLC1A4ENSG00000115902.6406.714701867.19110-2.1988031.7620029.67550K562RBM15
SLC1A4ENSG00000115902.61508.40750905.823600.7356011.254308.23220K562RBM17
SLC1A4ENSG00000115902.6476.62400650.31310-0.448303.258202.34030K562RBM22
SLC1A4ENSG00000115902.6987.066001715.06070-0.797003.015501.39460K562RBM39
SLC1A4ENSG00000115902.6452.72030684.39660-0.596203.916502.58740K562NELFE
SLC1A4ENSG00000115902.6409.99480766.96190-0.9035016.1386012.81830K562RPS10
SLC1A4ENSG00000115902.6356.10360502.93100-0.498102.887102.05130K562RPS19
SLC1A4ENSG00000115902.6778.12430557.732200.480303.188402.02690K562SAFB
SLC1A4ENSG00000115902.6576.850001275.25230-1.144503.857402.36740K562SF1
SLC1A4ENSG00000115902.6690.816101463.88230-1.083404.725102.98420K562SNRNP200
SLC1A4ENSG00000115902.6539.80510704.84860-0.384903.597402.54650K562SRPK2
SLC1A4ENSG00000115902.6399.61830665.10450-0.735007.881006.69700K562SRSF1
SLC1A4ENSG00000115902.6857.26200578.130000.568203.168002.02450K562SRSF4
SLC1A4ENSG00000115902.6556.32880864.94270-0.636706.054103.98960K562SSRP1
SLC1A4ENSG00000115902.6937.95570627.809600.579106.804005.50730K562SYNCRIP
SLC1A4ENSG00000115902.61134.34280649.247800.8049012.4732010.62330K562TIA1
SLC1A4ENSG00000115902.6859.17860593.257000.534203.605001.55600K562TRNAU1AP
SLC1A4ENSG00000115902.6481.57500657.77920-0.449804.665103.58910K562WDR43
SLC1A4ENSG00000115902.61296.582501022.829900.342002.692001.42180K562WRN
SLC1A4ENSG00000115902.6965.502501723.24850-0.835802.982401.32470K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC1A4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SLC1A4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SLC1A4 is not avaliable on ENCORE database.