SEPHS1

General Information

Gene Name : SEPHS1
Gene ID : ENSG00000086475.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SEPHS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SEPHS1	ENSG00000086475.14	58.95	58.09	58.52	ENCSR000AEF
HepG2	SEPHS1	ENSG00000086475.14	82.81	96.54	89.68	ENCSR985KAT
K562	SEPHS1	ENSG00000086475.14	60.11	53.73	56.92	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SEPHS1 is not avaliable on ENCORE database.

Proteins bound to RNA

SEPHS1 RNA is bound by 6 proteins.

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eCLIP assay for SEPHS1 is not avaliable on ENCORE database.

6 proteins are bound to SEPHS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	13390113	13390183	-	5'-UTR,intron-Distal,intron-Proximal	5.94030	17.66846	HepG2	DDX3X
chr10	13390183	13390236	-	5'-UTR,intron-Distal	5.01275	12.43527	HepG2	DDX3X
chr10	13389617	13389702	-	intron-Distal	4.01466	10.93118	HepG2	NKRF
chr10	13389996	13390073	-	5'-UTR,intron-Distal,intron-Proximal	6.37614	8.97384	HepG2	DDX3X
chr10	13389546	13389599	-	intron-Distal	3.93169	8.20482	HepG2	NKRF
chr10	13364922	13364954	-	CDS,intron-Distal	5.17295	7.65820	K562	LIN28B
chr10	13364800	13364861	-	CDS,intron-Distal,intron-Proximal	4.08048	7.29769	HepG2	PRPF8
chr10	13364883	13364922	-	CDS,intron-Distal	4.21488	6.87736	K562	LIN28B
chr10	13389914	13389958	-	intron-Distal	4.84147	6.87001	HepG2	NKRF
chr10	13364891	13364915	-	CDS,intron-Distal	5.39064	6.37354	HepG2	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 15 entries

eCLIP assay for SEPHS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SEPHS1 is not available on ENCORE database.
111 RBPs can affect the levels of SEPHS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SEPHS1 is not available on ENCORE database.

111 RBPs can affect the gene expression of SEPHS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SEPHS1	ENSG00000086475.10	339.19640	1212.66260	-1.83800	33.42140	31.62000	HepG2	DDX6
SEPHS1	ENSG00000086475.10	1109.38940	2058.81390	-0.89200	29.85030	28.65930	HepG2	SRFBP1
SEPHS1	ENSG00000086475.10	686.44460	1293.89170	-0.91450	27.45790	26.18980	HepG2	ZNF622
SEPHS1	ENSG00000086475.10	579.46370	1189.25140	-1.03730	27.69580	26.14730	HepG2	TRIM56
SEPHS1	ENSG00000086475.10	613.07890	1213.05710	-0.98450	25.98300	24.28080	HepG2	HNRNPU
SEPHS1	ENSG00000086475.10	585.43140	1131.97710	-0.95130	23.71310	22.39260	HepG2	SRSF9
SEPHS1	ENSG00000086475.10	632.54060	1176.47000	-0.89520	21.88790	20.29420	HepG2	UPF1
SEPHS1	ENSG00000086475.10	636.06930	1200.70340	-0.91660	21.37500	19.45670	HepG2	PARN
SEPHS1	ENSG00000086475.10	1254.15170	678.90140	0.88530	18.84250	17.37390	K562	FXR1
SEPHS1	ENSG00000086475.10	693.47890	1165.50820	-0.74900	16.47870	15.19870	HepG2	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 133 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SEPHS1 is not available on ENCORE database.

4 RBPs can affect the splicing of SEPHS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	SEPHS1	ENSG00000086475.10	chr10	-	13371697	13371821	13371697	13371788	13375816	13375971	0.07700	0.00000	0.00000	longer	K562	AQR
SE	SEPHS1	ENSG00000086475.10	chr10	-	13378242	13378350	13375816	13375971	13380704	13380808	-0.08800	0.00002	0.00080	excluded	K562	SF3B4
SE	SEPHS1	ENSG00000086475.10	chr10	-	13386757	13387028	13380704	13380808	13389999	13390297	-0.05400	0.00055	0.03871	excluded	HepG2	FTO
SE	SEPHS1	ENSG00000086475.10	chr10	-	13378242	13378397	13375900	13375971	13380704	13380808	-0.05600	0.00065	0.00852	excluded	K562	AQR
SE	SEPHS1	ENSG00000086475.10	chr10	-	13386757	13387028	13380704	13380808	13389999	13390280	-0.12000	0.00247	0.04318	excluded	K562	SRSF1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SEPHS1

General Information

Functions

Localization

Domains (AlphaFold: SEPHS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SEPHS1 is not avaliable on ENCORE database.

6 proteins are bound to SEPHS1 RNA:

eCLIP assay for SEPHS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SEPHS1 is not available on ENCORE database.

111 RBPs can affect the gene expression of SEPHS1 :

The Knockdown/knockout RNA-Seq assay for SEPHS1 is not available on ENCORE database.

4 RBPs can affect the splicing of SEPHS1 :

The Knockdown/knockout RNA-Seq assay for SEPHS1 is not avaliable on ENCORE database.