RPS9

General Information

Gene Name : RPS9
Gene ID : ENSG00000170889.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPS9)

Not Available

Antibody Validation

Bethyl Labs: A303-946A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPS9	ENSG00000170889.13	753.77	2021.42	1387.60	ENCSR000AEF
HepG2	RPS9	ENSG00000170889.13	1633.88	1161.56	1397.72	ENCSR985KAT
K562	RPS9	ENSG00000170889.13	2451.12	1517.50	1984.31	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	BGKcLV33-7,BGKcLV33-8		RPS9	K562	Released			CRISPR	KD% = 19.4,2.5

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
RPS9	ENCAB433JHD	A303-946A	1			Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
RPS9	K562	CRISPR	BGKcLV33-7,BGKcLV33-8	BGKcLV33-1,BGKcLV33-2	19.4,2.5	Released	ENCODE4
RPS9	K562	CRISPR	BGKcLV33-15,BGKcLV33-16	BGKcLV33-1,BGKcLV33-2	0.0,0.0	NotSatisfied	ENCODE4
RPS9	K562	CRISPR	RPS9-BGKcLV46-77B,RPS9-BGKcLV46-78B	NT-BGKcLV46-1B,NT-BGKcLV46-2B	63.5,74.8	Submitting	ENCORE2
RPS9	K562	CRISPR	BGKcLV46-79,BGKcLV46-80	BGKcLV46-1,BGKcLV46-2	42.0,54.1	NotSatisfied	ENCORE2
RPS9	HepG2	CRISPR	BGHcLV31-11,BGHcLV31-12	BGHcLV31-1,BGHcLV31-2	0.0,0.0	NotSatisfied	ENCODE4
RPS9	HepG2	CRISPR	BGHcLV47-65,BGHcLV47-66	BGHcLV47-1,BGHcLV47-2	39.0,51.0	NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
RPS9	Product_ID: A303-946A Lot_ID: 1 Source: Bethyl Labs Target Name: RPS9-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPS9 is not avaliable on ENCORE database.

Proteins bound to RNA

RPS9 RNA is bound by 35 proteins.

CanvasJS.com

eCLIP assay for RPS9 is not avaliable on ENCORE database.

35 proteins are bound to RPS9 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	54711265	54711289	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.68150	400.00000	K562	PABPC4
chr19	54704728	54704752	+	5'-UTR	5.19534	400.00000	K562	PABPC4
chr19	54704752	54704756	+	5'-UTR	4.93025	400.00000	K562	PABPC4
chr19	54705027	54705066	+	5'-UTR,CDS,intron-Proximal	4.52626	400.00000	K562	PABPC4
chr19	54710314	54710331	+	CDS,intron-Distal,intron-Proximal	4.76025	400.00000	K562	PABPC4
chr19	54710280	54710314	+	CDS,intron-Distal	4.76455	400.00000	K562	PABPC4
chr19	54710158	54710198	+	CDS,intron-Distal	4.14749	64.66599	K562	PABPC4
chr19	54710232	54710268	+	CDS,intron-Distal	4.33676	60.71115	K562	PABPC4
chr19	54705357	54705384	+	CDS	4.24766	59.90619	K562	PABPC4
chr19	54705085	54705099	+	CDS	3.19549	56.55284	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 124 entries

eCLIP assay for RPS9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPS9 is not available on ENCORE database.
130 RBPs can affect the levels of RPS9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPS9 is not available on ENCORE database.

130 RBPs can affect the gene expression of RPS9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPS9	ENSG00000170889.9	6861.45920	20429.11370	-1.57400	182.04250	179.79270	HepG2	SRSF1
RPS9	ENSG00000170889.9	6171.43840	18799.62930	-1.60700	151.53690	149.08470	HepG2	PTBP1
RPS9	ENSG00000170889.9	8622.26910	20921.67620	-1.27890	105.26400	103.18650	HepG2	NELFE
RPS9	ENSG00000170889.9	7086.09170	20359.16420	-1.52260	97.51710	94.72890	HepG2	QKI
RPS9	ENSG00000170889.9	8597.74830	19571.74810	-1.18670	92.92690	90.47470	HepG2	SF3B4
RPS9	ENSG00000170889.9	9143.35210	16620.55620	-0.86220	53.16740	51.35280	HepG2	SRSF9
RPS9	ENSG00000170889.9	6247.33750	19800.59190	-1.66420	49.55070	47.12090	HepG2	NCBP2
RPS9	ENSG00000170889.9	1741.88060	4904.58880	-1.49350	46.95630	45.00260	HepG2	RPS19
RPS9	ENSG00000170889.9	11169.32140	19486.61630	-0.80290	44.43710	42.56890	HepG2	RECQL
RPS9	ENSG00000170889.9	10900.52900	18475.01640	-0.76120	38.29370	36.49660	HepG2	PCBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 151 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPS9 is not available on ENCORE database.

60 RBPs can affect the splicing of RPS9 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RPS9	ENSG00000170889.9	chr19	+	54705269	54705477	54705027	54705149	54710143	54711498	-0.16300	0.00000	excluded	K562	SF3B4
SE	RPS9	ENSG00000170889.9	chr19	+	54710143	54710330	54705354	54705477	54711265	54711515	-0.06300	0.00000	excluded	K562	PRPF8
SE	RPS9	ENSG00000170889.9	chr19	+	54710420	54710592	54710108	54710330	54711265	54711515	0.13400	0.00000	included	K562	AQR
SE	RPS9	ENSG00000170889.9	chr19	+	54710420	54710592	54705354	54705477	54711265	54711515	-0.27200	0.00000	excluded	K562	FXR1
SE	RPS9	ENSG00000170889.9	chr19	+	54710420	54710592	54710143	54710330	54711265	54711390	0.05100	0.00000	included	K562	HNRNPA1
SE	RPS9	ENSG00000170889.9	chr19	+	54710420	54710592	54710143	54710330	54711265	54711390	0.12200	0.00000	included	K562	SUPV3L1
SE	RPS9	ENSG00000170889.9	chr19	+	54710143	54710330	54705354	54705477	54711265	54711515	-0.06400	0.00000	excluded	K562	EFTUD2
SE	RPS9	ENSG00000170889.9	chr19	+	54705269	54705477	54705027	54705149	54710143	54711498	-0.15800	0.00001	excluded	K562	U2AF2
SE	RPS9	ENSG00000170889.9	chr19	+	54710143	54710330	54705354	54705477	54711265	54711515	-0.07400	0.00000	excluded	K562	TARDBP
SE	RPS9	ENSG00000170889.9	chr19	+	54710143	54710330	54705354	54705477	54711265	54711515	-0.08100	0.00000	excluded	K562	HNRNPU

Showing 1 to 10 of 134 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPS9

General Information

Functions

Localization

Domains (AlphaFold: RPS9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPS9 is not avaliable on ENCORE database.

35 proteins are bound to RPS9 RNA:

eCLIP assay for RPS9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPS9 is not available on ENCORE database.

130 RBPs can affect the gene expression of RPS9 :

The Knockdown/knockout RNA-Seq assay for RPS9 is not available on ENCORE database.

60 RBPs can affect the splicing of RPS9 :

The Knockdown/knockout RNA-Seq assay for RPS9 is not avaliable on ENCORE database.