RIF1

General Information

Gene Name : RIF1
Gene ID : ENSG00000080345.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RIF1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RIF1	ENSG00000080345.17	25.55	21.80	23.68	ENCSR000AEF
HepG2	RIF1	ENSG00000080345.17	15.38	28.55	21.96	ENCSR985KAT
K562	RIF1	ENSG00000080345.17	27.27	28.35	27.81	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RIF1 is not avaliable on ENCORE database.

Proteins bound to RNA

RIF1 RNA is bound by 49 proteins.

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eCLIP assay for RIF1 is not avaliable on ENCORE database.

49 proteins are bound to RIF1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	152332325	152332400	+	3'-UTR,intron-Distal	4.80308	72.52090	K562	PUM2
chr2	152332277	152332321	+	3'-UTR,intron-Distal	4.94533	58.27310	K562	PUM2
chr2	152332404	152332448	+	3'-UTR,intron-Distal	4.51736	46.52780	K562	PUM2
chr2	152331994	152332062	+	3'-UTR,intron-Distal	5.86953	42.59069	K562	PUM2
chr2	152305630	152305777	+	intron-Distal	6.20177	38.93090	K562	KHSRP
chr2	152324782	152324832	+	intron-Distal	7.57461	32.48752	K562	ZRANB2
chr2	152289590	152289633	+	CDS,intron-Proximal	4.61573	32.25881	HepG2	BCLAF1
chr2	152322147	152322206	+	CDS	5.97476	27.56648	HepG2	BCLAF1
chr2	152285415	152285436	+	CDS	4.25264	26.65559	HepG2	BCLAF1
chr2	152322350	152322444	+	CDS	5.39502	24.63545	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 352 entries

eCLIP assay for RIF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RIF1 is not available on ENCORE database.
114 RBPs can affect the levels of RIF1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RIF1 is not available on ENCORE database.

114 RBPs can affect the gene expression of RIF1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RIF1	ENSG00000080345.13	4655.25190	2496.16750	0.89900	43.74050	42.35610	HepG2	SRSF1
RIF1	ENSG00000080345.13	1146.42790	2475.99390	-1.11090	33.41490	32.02650	HepG2	TIAL1
RIF1	ENSG00000080345.13	1804.74960	2841.50560	-0.65490	23.43690	21.92560	HepG2	CKAP4
RIF1	ENSG00000080345.13	2394.89010	3558.66580	-0.57140	21.68240	20.50860	HepG2	ZNF622
RIF1	ENSG00000080345.13	2758.58250	5471.47920	-0.98800	23.27790	20.48110	K562	FIP1L1
RIF1	ENSG00000080345.13	1359.51420	2263.63230	-0.73550	22.02260	20.34290	HepG2	DNAJC2
RIF1	ENSG00000080345.13	1525.88360	2497.83660	-0.71100	21.44700	20.06260	HepG2	TRIM56
RIF1	ENSG00000080345.13	3723.51130	2243.81050	0.73060	20.52970	19.19910	HepG2	TAF15
RIF1	ENSG00000080345.13	3099.76530	6210.95210	-1.00270	20.31560	17.25170	K562	PPIG
RIF1	ENSG00000080345.13	1269.67820	2305.89760	-0.86090	15.61300	14.28130	HepG2	HNRNPA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 144 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RIF1 is not available on ENCORE database.

33 RBPs can affect the splicing of RIF1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RIF1	ENSG00000080345.13	chr2	+	152325567	152325621	152325161	152325270	152326224	152326378	0.21400	0.00000	included	K562	SRSF1
SE	RIF1	ENSG00000080345.13	chr2	+	152324987	152325065	152324513	152324660	152325154	152325270	-0.29500	0.00000	excluded	K562	SRSF1
SE	RIF1	ENSG00000080345.13	chr2	+	152325567	152325621	152325161	152325270	152326224	152326378	0.07500	0.00859	included	K562	RPS3
SE	RIF1	ENSG00000080345.13	chr2	+	152319397	152322634	152318925	152318980	152324513	152324660	-0.37000	0.00000	excluded	K562	SF3B4
SE	RIF1	ENSG00000080345.13	chr2	+	152324987	152325065	152324513	152324660	152325154	152325270	-0.38400	0.00000	excluded	HepG2	RBM22
SE	RIF1	ENSG00000080345.13	chr2	+	152324987	152325065	152324513	152324660	152325154	152325270	0.33700	0.00004	included	HepG2	HNRNPK
SE	RIF1	ENSG00000080345.13	chr2	+	152313091	152313134	152311408	152311673	152314274	152314477	-0.17700	0.00000	excluded	K562	AQR
SE	RIF1	ENSG00000080345.13	chr2	+	152324987	152325065	152324513	152324660	152325154	152325270	-0.20900	0.00001	excluded	K562	AQR
SE	RIF1	ENSG00000080345.13	chr2	+	152319397	152322634	152318925	152318980	152324513	152324660	0.13300	0.00017	included	K562	FXR1
SE	RIF1	ENSG00000080345.13	chr2	+	152324987	152325065	152324513	152324660	152325154	152325270	-0.26600	0.00000	excluded	K562	PUS1

Showing 1 to 10 of 64 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RIF1

General Information

Functions

Localization

Domains (AlphaFold: RIF1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RIF1 is not avaliable on ENCORE database.

49 proteins are bound to RIF1 RNA:

eCLIP assay for RIF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RIF1 is not available on ENCORE database.

114 RBPs can affect the gene expression of RIF1 :

The Knockdown/knockout RNA-Seq assay for RIF1 is not available on ENCORE database.

33 RBPs can affect the splicing of RIF1 :

The Knockdown/knockout RNA-Seq assay for RIF1 is not avaliable on ENCORE database.