RHBDF1

General Information

Gene Name : RHBDF1
Gene ID : ENSG00000007384.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RHBDF1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RHBDF1	ENSG00000007384.15	0.00	0.27	0.14	ENCSR000AEF
HepG2	RHBDF1	ENSG00000007384.15	13.79	4.64	9.21	ENCSR985KAT
K562	RHBDF1	ENSG00000007384.15	4.00	2.80	3.40	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RHBDF1 is not avaliable on ENCORE database.

Proteins bound to RNA

RHBDF1 RNA is bound by 12 proteins.

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eCLIP assay for RHBDF1 is not avaliable on ENCORE database.

12 proteins are bound to RHBDF1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	114627	114697	-	intron-Distal,intron-Proximal	6.63973	19.71511	K562	AQR
chr16	109823	109919	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.95988	12.01365	K562	SF3B4
chr16	110532	110599	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.37949	10.30372	K562	SF3B4
chr16	113764	113839	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.37818	9.79392	K562	BUD13
chr16	108928	108972	-	intron-Distal,intron-Proximal	5.12800	8.52787	K562	AQR
chr16	113726	113797	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.31525	7.40437	K562	DDX24
chr16	121933	122020	-	intron-Distal	5.61935	7.29411	HepG2	XPO5
chr16	113766	113869	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.31602	7.11699	K562	SF3B4
chr16	110544	110620	-	intron-Distal,intron-Proximal	4.08365	6.87424	K562	BUD13
chr16	109093	109158	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.78992	6.80869	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 30 entries

eCLIP assay for RHBDF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RHBDF1 is not available on ENCORE database.
125 RBPs can affect the levels of RHBDF1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RHBDF1 is not available on ENCORE database.

125 RBPs can affect the gene expression of RHBDF1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RHBDF1	ENSG00000007384.11	1502.63490	547.33190	1.45690	35.07950	32.88200	K562	RBM15
RHBDF1	ENSG00000007384.11	524.13390	110.61380	2.24430	30.52680	28.80730	HepG2	DDX6
RHBDF1	ENSG00000007384.11	480.82070	109.91910	2.12900	29.31460	27.22390	HepG2	G3BP1
RHBDF1	ENSG00000007384.11	771.59310	310.36810	1.31380	28.82380	27.03410	HepG2	AUH
RHBDF1	ENSG00000007384.11	431.41940	120.23920	1.84310	28.47550	26.92450	HepG2	SF3B4
RHBDF1	ENSG00000007384.11	802.14750	297.84550	1.42920	26.75830	25.47740	HepG2	RBM22
RHBDF1	ENSG00000007384.11	440.26060	128.53700	1.77610	26.45370	25.12970	HepG2	NELFE
RHBDF1	ENSG00000007384.11	742.12790	322.76230	1.20110	26.24560	24.81480	HepG2	ACO1
RHBDF1	ENSG00000007384.11	423.80900	111.43980	1.92700	23.53830	21.69540	HepG2	HNRNPK
RHBDF1	ENSG00000007384.11	406.14540	106.25970	1.93430	22.37720	20.80090	HepG2	EIF2S1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 148 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RHBDF1 is not available on ENCORE database.

11 RBPs can affect the splicing of RHBDF1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RHBDF1	ENSG00000007384.11	chr16	-	110002	110096	109729	109824	110213	110277	0.70900	0.00000	0.00014	included	HepG2	HNRNPK
SE	RHBDF1	ENSG00000007384.11	chr16	-	110002	110096	109729	109824	110213	110277	0.28800	0.00000	0.00004	included	K562	PUS1
A3SS	RHBDF1	ENSG00000007384.11	chr16	-	109729	110096	109729	109824	110213	110277	0.68300	0.00000	0.00002	longer	HepG2	HNRNPK
A3SS	RHBDF1	ENSG00000007384.11	chr16	-	109729	110096	109729	109824	110213	110277	0.39500	0.00000	0.00015	longer	K562	AKAP8L
A3SS	RHBDF1	ENSG00000007384.11	chr16	-	109729	110096	109729	109824	110213	110277	0.38100	0.00000	0.00009	longer	K562	PUS1
SE	RHBDF1	ENSG00000007384.11	chr16	-	110002	110096	109729	109824	110213	110277	0.27900	0.00001	0.00069	included	K562	AGGF1
A3SS	RHBDF1	ENSG00000007384.11	chr16	-	113584	113920	113584	113798	114696	114827	0.21300	0.00002	0.00338	longer	K562	AGGF1
RI	RHBDF1	ENSG00000007384.11	chr16	-	108971	109347	108971	109125	109246	109347	-0.72400	0.00002	0.00356	excluded	HepG2	TBRG4
A3SS	RHBDF1	ENSG00000007384.11	chr16	-	109729	110096	109729	109824	110213	110277	0.35200	0.00004	0.00638	longer	K562	AGGF1
RI	RHBDF1	ENSG00000007384.11	chr16	-	108971	109347	108971	109125	109246	109347	0.46300	0.00007	0.03717	included	K562	EWSR1

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RHBDF1

General Information

Functions

Localization

Domains (AlphaFold: RHBDF1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RHBDF1 is not avaliable on ENCORE database.

12 proteins are bound to RHBDF1 RNA:

eCLIP assay for RHBDF1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RHBDF1 is not available on ENCORE database.

125 RBPs can affect the gene expression of RHBDF1 :

The Knockdown/knockout RNA-Seq assay for RHBDF1 is not available on ENCORE database.

11 RBPs can affect the splicing of RHBDF1 :

The Knockdown/knockout RNA-Seq assay for RHBDF1 is not avaliable on ENCORE database.