RFC2

General Information

Gene Name : RFC2
Gene ID : ENSG00000049541.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RFC2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RFC2	ENSG00000049541.10	68.48	82.37	75.43	ENCSR000AEF
HepG2	RFC2	ENSG00000049541.10	48.93	47.29	48.11	ENCSR985KAT
K562	RFC2	ENSG00000049541.10	112.53	108.54	110.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RFC2 is not avaliable on ENCORE database.

Proteins bound to RNA

RFC2 RNA is bound by 13 proteins.

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eCLIP assay for RFC2 is not avaliable on ENCORE database.

13 proteins are bound to RFC2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	73657483	73657530	-	3'-UTR,CDS,intron-Distal	6.12627	45.35934	K562	YBX3
chr7	73663444	73663448	-	5'-UTR,CDS,intron-Distal	4.73509	21.49549	K562	YBX3
chr7	73663420	73663444	-	5'-UTR,CDS,intron-Distal	4.15763	19.84673	K562	YBX3
chr7	73664068	73664074	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.26549	18.71615	K562	YBX3
chr7	73664074	73664078	-	5'-UTR,CDS,intron-Distal	4.44537	16.53321	K562	YBX3
chr7	73668606	73668736	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.20952	13.41210	K562	DDX3X
chr7	73654320	73654337	-	3'-UTR,CDS,intron-Distal	4.04357	13.30419	K562	YBX3
chr7	73654306	73654320	-	3'-UTR,CDS,intron-Distal	4.60978	13.13020	K562	YBX3
chr7	73651741	73651825	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.23591	11.97728	K562	SF3B4
chr7	73654337	73654346	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84990	11.15451	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 33 entries

eCLIP assay for RFC2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RFC2 is not available on ENCORE database.
102 RBPs can affect the levels of RFC2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RFC2 is not available on ENCORE database.

102 RBPs can affect the gene expression of RFC2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RFC2	ENSG00000049541.6	278.62730	709.47690	-1.34840	29.56940	28.38230	HepG2	SRFBP1
RFC2	ENSG00000049541.6	249.97160	628.16730	-1.32940	22.49140	21.30040	HepG2	RBM22
RFC2	ENSG00000049541.6	1304.94050	2763.34380	-1.08240	22.70830	21.20930	K562	AQR
RFC2	ENSG00000049541.6	218.67570	468.72790	-1.10000	16.72700	15.66480	HepG2	ZNF622
RFC2	ENSG00000049541.6	116.17560	370.45300	-1.67300	16.06790	14.45430	HepG2	RRP9
RFC2	ENSG00000049541.6	850.23000	1560.73780	-0.87630	15.58020	14.24670	K562	HNRNPC
RFC2	ENSG00000049541.6	128.34320	374.50030	-1.54500	15.15330	13.48260	HepG2	PRPF8
RFC2	ENSG00000049541.6	200.10200	426.18970	-1.09080	14.23350	12.88270	HepG2	UPF1
RFC2	ENSG00000049541.6	1571.04620	2227.65410	-0.50380	14.36700	12.85110	K562	NSUN2
RFC2	ENSG00000049541.6	184.46160	483.33140	-1.38970	13.82870	12.50920	HepG2	SUPV3L1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 125 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RFC2 is not available on ENCORE database.

21 RBPs can affect the splicing of RFC2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RFC2	ENSG00000049541.6	chr7	-	73660991	73661093	73657475	73657576	73663341	73663448	-0.14700	0.00002	excluded	K562	SRSF1
SE	RFC2	ENSG00000049541.6	chr7	-	73651691	73651804	73649861	73649975	73653252	73653318	-0.05800	0.00000	excluded	K562	AQR
SE	RFC2	ENSG00000049541.6	chr7	-	73654267	73654425	73653252	73653318	73657475	73657576	-0.17800	0.00000	excluded	K562	AQR
SE	RFC2	ENSG00000049541.6	chr7	-	73660991	73661093	73657475	73657576	73663341	73663448	-0.11100	0.00000	excluded	K562	PUS1
SE	RFC2	ENSG00000049541.6	chr7	-	73660991	73661093	73657475	73657576	73663341	73663448	-0.16500	0.00014	excluded	K562	EFTUD2
SE	RFC2	ENSG00000049541.6	chr7	-	73660991	73661093	73657475	73657576	73663341	73663448	-0.09200	0.00026	excluded	K562	UTP18
SE	RFC2	ENSG00000049541.6	chr7	-	73660991	73661093	73657475	73657576	73663341	73663448	-0.10100	0.00003	excluded	K562	RBM15
SE	RFC2	ENSG00000049541.6	chr7	-	73660991	73661093	73657475	73657576	73663341	73663448	-0.08600	0.00013	excluded	K562	AGGF1
A3SS	RFC2	ENSG00000049541.6	chr7	-	73651679	73651845	73651679	73651772	73653252	73653364	0.06700	0.00000	longer	K562	AQR
A3SS	RFC2	ENSG00000049541.6	chr7	-	73663341	73663550	73663341	73663448	73664068	73664159	0.32200	0.00000	longer	K562	AQR

Showing 1 to 10 of 56 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RFC2

General Information

Functions

Localization

Domains (AlphaFold: RFC2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RFC2 is not avaliable on ENCORE database.

13 proteins are bound to RFC2 RNA:

eCLIP assay for RFC2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RFC2 is not available on ENCORE database.

102 RBPs can affect the gene expression of RFC2 :

The Knockdown/knockout RNA-Seq assay for RFC2 is not available on ENCORE database.

21 RBPs can affect the splicing of RFC2 :

The Knockdown/knockout RNA-Seq assay for RFC2 is not avaliable on ENCORE database.