PDCD10

General Information

Gene Name : PDCD10
Gene ID : ENSG00000114209.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PDCD10)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PDCD10	ENSG00000114209.14	114.39	96.19	105.29	ENCSR000AEF
HepG2	PDCD10	ENSG00000114209.14	27.96	56.14	42.05	ENCSR985KAT
K562	PDCD10	ENSG00000114209.14	157.61	185.66	171.63	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PDCD10 is not avaliable on ENCORE database.

Proteins bound to RNA

PDCD10 RNA is bound by 30 proteins.

CanvasJS.com

eCLIP assay for PDCD10 is not avaliable on ENCORE database.

30 proteins are bound to PDCD10 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	167402024	167402129	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.73139	71.60222	K562	PUM2
chr3	167401966	167402024	-	3'-UTR,intron-Distal,intron-Proximal	4.59258	52.99935	K562	PUM2
chr3	167401763	167401813	-	3'-UTR,intron-Distal,intron-Proximal	5.06756	39.65693	K562	PUM2
chr3	167401906	167402036	-	3'-UTR,intron-Distal,intron-Proximal	5.32902	27.45190	K562	ZC3H11A
chr3	167431629	167431693	-	intron-Distal	4.77427	22.43880	K562	EXOSC5
chr3	167431426	167431481	-	intron-Distal	6.61821	22.35602	K562	EXOSC5
chr3	167431524	167431577	-	intron-Distal	5.61563	21.71575	K562	EXOSC5
chr3	167452592	167452684	-	5'-UTR,intron-Distal,intron-Proximal	3.66769	17.39026	K562	DDX3X
chr3	167431260	167431321	-	intron-Distal	5.30449	17.11005	K562	EXOSC5
chr3	167432963	167433041	-	intron-Distal	6.10390	16.99140	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 100 entries

eCLIP assay for PDCD10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PDCD10 is not available on ENCORE database.
107 RBPs can affect the levels of PDCD10.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PDCD10 is not available on ENCORE database.

107 RBPs can affect the gene expression of PDCD10 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PDCD10	ENSG00000114209.10	1981.80630	985.60970	1.00760	36.97040	35.68750	HepG2	SRFBP1
PDCD10	ENSG00000114209.10	738.65000	2086.93780	-1.49840	33.09430	29.72800	K562	TIAL1
PDCD10	ENSG00000114209.10	250.60220	685.77400	-1.45230	27.08070	25.81280	HepG2	TIAL1
PDCD10	ENSG00000114209.10	1130.29370	2419.98400	-1.09830	27.41060	25.61740	K562	HNRNPC
PDCD10	ENSG00000114209.10	2013.97060	4233.01470	-1.07160	24.80690	23.24000	K562	AQR
PDCD10	ENSG00000114209.10	380.52890	732.90780	-0.94560	18.60870	17.16870	HepG2	SMN1
PDCD10	ENSG00000114209.10	2008.42050	3082.13230	-0.61790	18.30060	16.63170	K562	UPF1
PDCD10	ENSG00000114209.10	1727.35550	2793.17240	-0.69330	15.09720	13.62020	K562	EIF2S2
PDCD10	ENSG00000114209.10	471.46560	826.47030	-0.80980	11.97050	10.93120	HepG2	TAF15
PDCD10	ENSG00000114209.10	1366.02620	872.61780	0.64650	11.23850	10.34660	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 125 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PDCD10 is not available on ENCORE database.

26 RBPs can affect the splicing of PDCD10 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PDCD10	ENSG00000114209.10	chr3	-	167443188	167443261	167437849	167438061	167452593	167452651	-0.19000	0.00000	excluded	K562	SF3B4
SE	PDCD10	ENSG00000114209.10	chr3	-	167422629	167422722	167414796	167414914	167437849	167438061	-0.06100	0.00011	excluded	K562	AQR
SE	PDCD10	ENSG00000114209.10	chr3	-	167443188	167443261	167437849	167438061	167452593	167452651	-0.18400	0.00000	excluded	K562	PUS1
SE	PDCD10	ENSG00000114209.10	chr3	-	167443188	167443261	167437849	167438061	167452593	167452651	0.23500	0.00004	included	HepG2	PTBP1
SE	PDCD10	ENSG00000114209.10	chr3	-	167443188	167443261	167437849	167438061	167452593	167452651	-0.18500	0.00000	excluded	K562	U2AF1
SE	PDCD10	ENSG00000114209.10	chr3	-	167443188	167443261	167437849	167438061	167452593	167452651	-0.19600	0.00000	excluded	K562	U2AF2
SE	PDCD10	ENSG00000114209.10	chr3	-	167443188	167443261	167437849	167438061	167452593	167452651	-0.18000	0.00009	excluded	K562	RBM15
SE	PDCD10	ENSG00000114209.10	chr3	-	167443188	167443261	167437849	167438061	167452593	167452651	0.33100	0.00000	included	K562	PTBP1
A3SS	PDCD10	ENSG00000114209.10	chr3	-	167414796	167414931	167414796	167414914	167422629	167422867	0.13500	0.00000	longer	K562	AQR
A3SS	PDCD10	ENSG00000114209.10	chr3	-	167437849	167438093	167437849	167438061	167452001	167452214	0.12500	0.00000	longer	K562	AQR

Showing 1 to 10 of 44 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PDCD10

General Information

Functions

Localization

Domains (AlphaFold: PDCD10)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PDCD10 is not avaliable on ENCORE database.

30 proteins are bound to PDCD10 RNA:

eCLIP assay for PDCD10 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PDCD10 is not available on ENCORE database.

107 RBPs can affect the gene expression of PDCD10 :

The Knockdown/knockout RNA-Seq assay for PDCD10 is not available on ENCORE database.

26 RBPs can affect the splicing of PDCD10 :

The Knockdown/knockout RNA-Seq assay for PDCD10 is not avaliable on ENCORE database.