NOP58

General Information

Gene Name : NOP58
Gene ID : ENSG00000055044.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NOP58)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NOP58	ENSG00000055044.10	169.07	152.15	160.61	ENCSR000AEF
HepG2	NOP58	ENSG00000055044.10	98.05	178.28	138.16	ENCSR985KAT
K562	NOP58	ENSG00000055044.10	139.66	146.96	143.31	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NOP58 is not avaliable on ENCORE database.

Proteins bound to RNA

NOP58 RNA is bound by 53 proteins.

CanvasJS.com

eCLIP assay for NOP58 is not avaliable on ENCORE database.

53 proteins are bound to NOP58 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	203156098	203156109	+	intron-Distal	5.87803	400.00000	K562	AATF
chr2	203156126	203156146	+	intron-Distal	6.57400	400.00000	HepG2	NOLC1
chr2	203157809	203157863	+	intron-Distal	5.09245	400.00000	HepG2	DKC1
chr2	203156074	203156098	+	intron-Distal,intron-Proximal	5.77775	400.00000	HepG2	DKC1
chr2	203156122	203156126	+	intron-Distal	6.05398	400.00000	HepG2	NOLC1
chr2	203141159	203141199	+	intron-Distal	7.11156	400.00000	HepG2	NOLC1
chr2	203157789	203157859	+	intron-Distal	6.09222	400.00000	HepG2	NOLC1
chr2	203156095	203156118	+	intron-Distal	5.80218	400.00000	HepG2	NOLC1
chr2	203156064	203156095	+	intron-Distal,intron-Proximal	4.82964	400.00000	HepG2	NOLC1
chr2	203142859	203142865	+	intron-Distal,intron-Proximal	4.01807	400.00000	HepG2	DKC1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 239 entries

eCLIP assay for NOP58 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NOP58 is not available on ENCORE database.
95 RBPs can affect the levels of NOP58.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NOP58 is not available on ENCORE database.

95 RBPs can affect the gene expression of NOP58 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NOP58	ENSG00000055044.6	3318.06410	1855.13350	0.83870	32.44800	31.21980	HepG2	SRSF1
NOP58	ENSG00000055044.6	3213.30140	1728.05190	0.89480	29.87730	28.02520	K562	FXR1
NOP58	ENSG00000055044.6	8888.98620	4991.97750	0.83230	23.46750	21.75160	K562	DDX47
NOP58	ENSG00000055044.6	1689.03940	3808.24920	-1.17290	22.29080	20.66220	HepG2	GPKOW
NOP58	ENSG00000055044.6	1758.16290	3634.29040	-1.04760	21.03930	19.56090	HepG2	HNRNPLL
NOP58	ENSG00000055044.6	3375.38540	1928.07140	0.80780	20.01870	17.81040	K562	U2AF2
NOP58	ENSG00000055044.6	1950.35470	3659.48540	-0.90790	18.93920	17.58100	HepG2	BOP1
NOP58	ENSG00000055044.6	4062.82140	2371.84700	0.77640	19.17910	17.10270	K562	SYNCRIP
NOP58	ENSG00000055044.6	2686.71570	3720.21010	-0.46950	17.62740	15.96760	K562	NSUN2
NOP58	ENSG00000055044.6	1788.45720	2860.89140	-0.67770	16.28150	14.73490	HepG2	HNRNPF
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NOP58 is not available on ENCORE database.

26 RBPs can affect the splicing of NOP58 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	NOP58	ENSG00000055044.6	chr2	+	203142934	203143052	203142672	203142725	203147073	203147195	-0.14500	0.00000	excluded	HepG2	U2AF1
SE	NOP58	ENSG00000055044.6	chr2	+	203164701	203164860	203162567	203162629	203164956	203165090	0.07900	0.00005	included	HepG2	HNRNPK
SE	NOP58	ENSG00000055044.6	chr2	+	203164701	203164860	203162567	203162629	203164956	203165090	0.13700	0.00000	included	HepG2	QKI
SE	NOP58	ENSG00000055044.6	chr2	+	203142934	203143052	203142672	203142725	203147073	203147195	-0.19600	0.00000	excluded	HepG2	U2AF2
SE	NOP58	ENSG00000055044.6	chr2	+	203142672	203142725	203139835	203139912	203147073	203147195	-0.10200	0.00000	excluded	K562	AQR
SE	NOP58	ENSG00000055044.6	chr2	+	203152252	203152447	203149067	203149204	203155045	203155103	-0.11700	0.00003	excluded	K562	AQR
SE	NOP58	ENSG00000055044.6	chr2	+	203160396	203160560	203157499	203157626	203162101	203162236	-0.17700	0.00000	excluded	K562	AQR
SE	NOP58	ENSG00000055044.6	chr2	+	203164915	203165090	203162463	203162629	203167643	203167712	-0.05400	0.00000	excluded	K562	AQR
SE	NOP58	ENSG00000055044.6	chr2	+	203164956	203165090	203162567	203162629	203167643	203167780	-0.05400	0.00000	excluded	K562	PUS1
SE	NOP58	ENSG00000055044.6	chr2	+	203142934	203143052	203142672	203142725	203147073	203147195	-0.15200	0.00000	excluded	HepG2	SFPQ

Showing 1 to 10 of 49 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NOP58

General Information

Functions

Localization

Domains (AlphaFold: NOP58)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NOP58 is not avaliable on ENCORE database.

53 proteins are bound to NOP58 RNA:

eCLIP assay for NOP58 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NOP58 is not available on ENCORE database.

95 RBPs can affect the gene expression of NOP58 :

The Knockdown/knockout RNA-Seq assay for NOP58 is not available on ENCORE database.

26 RBPs can affect the splicing of NOP58 :

The Knockdown/knockout RNA-Seq assay for NOP58 is not avaliable on ENCORE database.