NIF3L1

General Information

Gene Name : NIF3L1
Gene ID : ENSG00000196290.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NIF3L1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NIF3L1	ENSG00000196290.14	48.79	38.11	43.45	ENCSR000AEF
HepG2	NIF3L1	ENSG00000196290.14	56.60	74.73	65.67	ENCSR985KAT
K562	NIF3L1	ENSG00000196290.14	36.96	43.31	40.14	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NIF3L1 is not avaliable on ENCORE database.

Proteins bound to RNA

NIF3L1 RNA is bound by 3 proteins.

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eCLIP assay for NIF3L1 is not avaliable on ENCORE database.

3 proteins are bound to NIF3L1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	201756826	201756906	+	CDS	5.44783	10.49321	K562	PUM2
chr2	201757931	201758025	+	CDS,intron-Proximal	3.19057	5.58362	HepG2	U2AF2
chr2	201768539	201768587	+	3'-UTR	4.78874	5.45041	K562	PUM2
chr2	201764507	201764625	+	intron-Distal	3.82981	3.04224	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 4 of 4 entries

eCLIP assay for NIF3L1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NIF3L1 is not available on ENCORE database.
105 RBPs can affect the levels of NIF3L1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NIF3L1 is not available on ENCORE database.

105 RBPs can affect the gene expression of NIF3L1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NIF3L1	ENSG00000196290.10	611.53270	1160.36800	-0.92410	22.58750	21.51550	HepG2	SRFBP1
NIF3L1	ENSG00000196290.10	378.28410	813.47530	-1.10460	19.25960	18.15800	HepG2	TIAL1
NIF3L1	ENSG00000196290.10	298.32590	738.57190	-1.30780	19.38590	17.69900	HepG2	SF3B1
NIF3L1	ENSG00000196290.10	619.06110	1110.92280	-0.84360	16.95660	15.59410	HepG2	SRSF5
NIF3L1	ENSG00000196290.10	464.94250	822.10580	-0.82230	16.31540	15.26380	HepG2	ZNF622
NIF3L1	ENSG00000196290.10	703.54230	1194.38130	-0.76360	15.54120	14.37120	HepG2	PUM1
NIF3L1	ENSG00000196290.10	576.31610	1125.08270	-0.96510	15.27460	14.02690	HepG2	PUF60
NIF3L1	ENSG00000196290.10	302.14890	689.83150	-1.19100	15.31860	13.86140	HepG2	CPSF6
NIF3L1	ENSG00000196290.10	226.39840	563.67050	-1.31600	15.33940	13.65710	HepG2	PRPF8
NIF3L1	ENSG00000196290.10	411.83470	747.49990	-0.86000	14.58150	13.21900	HepG2	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NIF3L1 is not available on ENCORE database.

3 RBPs can affect the splicing of NIF3L1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NIF3L1	ENSG00000196290.10	chr2	+	201755245	201755308	201754169	201754375	201756640	201757102	0.51400	0.00000	0.00001	included	HepG2	HNRNPU
SE	NIF3L1	ENSG00000196290.10	chr2	+	201755245	201755308	201754169	201754375	201756640	201757102	0.65700	0.00001	0.00094	included	K562	HNRNPU
SE	NIF3L1	ENSG00000196290.10	chr2	+	201761798	201761937	201759986	201760113	201764107	201764191	-0.09300	0.00009	0.00153	excluded	K562	AQR
SE	NIF3L1	ENSG00000196290.10	chr2	+	201761798	201761937	201759986	201760113	201764107	201764191	-0.12300	0.00013	0.00755	excluded	K562	HNRNPU
SE	NIF3L1	ENSG00000196290.10	chr2	+	201761798	201761937	201759986	201760113	201764107	201764191	-0.07800	0.00135	0.02186	excluded	K562	PUS1
SE	NIF3L1	ENSG00000196290.10	chr2	+	201755245	201755308	201754169	201754375	201756640	201757102	0.21300	0.00191	0.02105	included	K562	AQR

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NIF3L1

General Information

Functions

Localization

Domains (AlphaFold: NIF3L1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NIF3L1 is not avaliable on ENCORE database.

3 proteins are bound to NIF3L1 RNA:

eCLIP assay for NIF3L1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NIF3L1 is not available on ENCORE database.

105 RBPs can affect the gene expression of NIF3L1 :

The Knockdown/knockout RNA-Seq assay for NIF3L1 is not available on ENCORE database.

3 RBPs can affect the splicing of NIF3L1 :

The Knockdown/knockout RNA-Seq assay for NIF3L1 is not avaliable on ENCORE database.